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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9962 (46 seq.)
>W1711219892
LXPW01000023
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
24045
23953
-
Ser
GCT
[ENA]
¡û
>C171016584
CP012334
Betaproteobacteria
Bordetella sp. H567 [CP012334]
1552025
1552117
+
Ser
GCT
-
¡û
>C001934
AM167904
Betaproteobacteria
Bordetella avium 197N [AM167904]
2768859
2768767
-
Ser
GCT
[Ensembl]
¡û
>W141139282
AWNL01000014
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
58264
58172
-
Ser
GCT
[ENA]
¡û
>W141139352
AWNM01000037
Betaproteobacteria
Bordetella hinzii ATCC 51730 [AWNM]
30447
30539
+
Ser
GCT
[ENA]
¡û
>W141277467
JAEP01000013
Betaproteobacteria
Bordetella petrii J51 [JAEP]
87433
87341
-
Ser
GCT
[ENA]
¡û
>WENV183730078
PJTR01000541
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
10261
10353
+
Ser
GCT
[ENA]
¢þ
>W141383366
JDFP01000003
Betaproteobacteria
Bordetella holmesii 30539 [JDFP]
63917
63825
-
Ser
GCT
[ENA]
¡û
>W141400899
JDSJ01000004
Betaproteobacteria
Bordetella holmesii 70147 [JDSJ]
786704
786612
-
Ser
GCT
[ENA]
¡û
>C181033930
CP018890
Betaproteobacteria
Bordetella holmesii [CP018890]
2427308
2427216
-
Ser
GCT
-
¡û
>C181033984
CP018891
Betaproteobacteria
Bordetella holmesii [CP018891]
2428306
2428214
-
Ser
GCT
-
¡û
>C181034146
CP018894
Betaproteobacteria
Bordetella holmesii [CP018894]
2435217
2435125
-
Ser
GCT
-
¡û
>C181034197
CP018895
Betaproteobacteria
Bordetella holmesii [CP018895]
2433158
2433066
-
Ser
GCT
-
¡û
>C181078164
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
4240284
4240192
-
Ser
GCT
-
¡û
>C181128265
CP026124
Betaproteobacteria
Achromobacter sp. AONIH1 [CP026124]
5774800
5774708
-
Ser
GCT
-
¡û
>C181169428
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
1711308
1711216
-
Ser
GCT
-
¡û
>C191027001
CP024172
Betaproteobacteria
Bordetella hinzii H720 [CP024172]
424438
424346
-
Ser
GCT
-
¡û
>W141520766
JGWB01000101
Betaproteobacteria
Bordetella holmesii CDC-H785-BH [JGWB]
49206
49298
+
Ser
GCT
[ENA]
¡û
>W141520826
JGWC01000181
Betaproteobacteria
Bordetella holmesii 04P3421 [JGWC]
7709
7617
-
Ser
GCT
[ENA]
¡û
>W141520848
JGWD01000084
Betaproteobacteria
Bordetella holmesii CDC-H643-BH [JGWD]
7874
7782
-
Ser
GCT
[ENA]
¡û
>W141532092
JHEQ01000025
Betaproteobacteria
Bordetella hinzii 5132 [JHEQ]
159375
159467
+
Ser
GCT
[ENA]
¡û
>C191205165
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
4957688
4957780
+
Ser
GCT
-
¡û
>C191209777
LR134382
Betaproteobacteria
Bordetella hinzii NCTC13199 [LR134382]
4785763
4785855
+
Ser
GCT
-
¡û
>W1910890571
NEVI01000017
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
109578
109486
-
Ser
GCT
[ENA]
¡û
>W1910890598
NEVJ01000002
Betaproteobacteria
Bordetella genomosp. 9 9 AU21707 [NEVJ]
237910
238002
+
Ser
GCT
[ENA]
¡û
>W1910891070
NEVS01000004
Betaproteobacteria
Bordetella genomosp. 11 11 AU8856 [NEVS]
151546
151638
+
Ser
GCT
[ENA]
¡û
>W1911566185
PCOQ01000008
Betaproteobacteria
Achromobacter sp. MYb9 [PCOQ]
150769
150861
+
Ser
GCT
[ENA]
¡û
>W1911746205
QVSM01000006
Betaproteobacteria
Bordetella avium BA19 [QVSM]
67179
67087
-
Ser
GCT
[ENA]
¡û
>W1911746252
QVSN01000004
Betaproteobacteria
Bordetella avium BA18 [QVSN]
67183
67091
-
Ser
GCT
[ENA]
¡û
>W1911746474
QVSR01000005
Betaproteobacteria
Bordetella avium BA14 [QVSR]
67184
67092
-
Ser
GCT
[ENA]
¡û
>W1911746532
QVSS01000005
Betaproteobacteria
Bordetella avium BA13 [QVSS]
67182
67090
-
Ser
GCT
[ENA]
¡û
>W1911746589
QVST01000005
Betaproteobacteria
Bordetella avium BA12 [QVST]
67173
67081
-
Ser
GCT
[ENA]
¡û
>W1911746697
QVSV01000004
Betaproteobacteria
Bordetella avium BA10 [QVSV]
67184
67092
-
Ser
GCT
[ENA]
¡û
>W1911746875
QVSY01000003
Betaproteobacteria
Bordetella avium BA6 [QVSY]
369057
368965
-
Ser
GCT
[ENA]
¡û
>W1911746925
QVSZ01000005
Betaproteobacteria
Bordetella avium BA5 [QVSZ]
67182
67090
-
Ser
GCT
[ENA]
¡û
>W1911746980
QVTA01000004
Betaproteobacteria
Bordetella avium BA4 [QVTA]
66975
66883
-
Ser
GCT
[ENA]
¡û
>W1810270666
PREU01000007
Betaproteobacteria
Achromobacter spanius 6 [PREU]
33169
33261
+
Ser
GCT
[ENA]
¡û
>W1810720802
QNRM01000004
Betaproteobacteria
Achromobacter marplatensis CECT 7342 [QNRM]
190688
190780
+
Ser
GCT
[ENA]
¡û
>W10115879
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
38611
38519
-
Ser
GCT
[ENA]
¡û
>W11120376
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
38611
38519
-
Ser
GCT
[ENA]
¡û
>W1511591813
LBHW01000008
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
140665
140573
-
Ser
GCT
[ENA]
¡û
>C161094153
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
1615172
1615264
+
Ser
GCT
-
¡û
>W1610093617
CYTC01000007
Betaproteobacteria
Achromobacter kerstersii ATCC31444 [CYTC]
188397
188305
-
Ser
GCT
[ENA]
¡û
>W1610447546
FKBR01000031
Betaproteobacteria
Bordetella trematum [FKBR]
63665
63573
-
Ser
GCT
[ENA]
¡û
>W1611004364
LXPW01000023
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
24045
23953
-
Ser
GCT
[ENA]
¡û
>W1710447174
FKBR01000031
Betaproteobacteria
Bordetella trematum [FKBR]
63665
63573
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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