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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99852 (43 seq.)
>W1711046904
LROR01000034
Bacillota
Clostridium coskatii [LROR]
114880
114964
+
Leu
TAG
[ENA]
¡û
>W1711046914
LROR01000035
Bacillota
Clostridium coskatii [LROR]
20242
20158
-
Leu
TAG
[ENA]
¡û
>W1711047007
LROS01000066
Bacillota
Clostridium ragsdalei P11 [LROS]
20939
20855
-
Leu
TAG
[ENA]
¡û
>W1711047015
LROS01000075
Bacillota
Clostridium ragsdalei P11 [LROS]
27945
27861
-
Leu
TAG
[ENA]
¡û
>W141203802
AZJA01000018
Bacillota
Staphylococcus aureus subsp. aureus KPL1845 [AZJA]
318242
318159
-
Leu
TAG
[ENA]
¡û
>WENV170688487
LFRM01248241
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2058
1974
-
Leu
TAG
[ENA]
¢þ
>C191065560
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
3925167
3925083
-
Leu
TAG
-
¡û
>C191065573
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
3151647
3151563
-
Leu
TAG
-
¡û
>W1910025317
BDXM01000001
Bacillota
Staphylococcus aureus M1K151 [BDXM]
389
472
+
Leu
TAG
[ENA]
¡û
>W1910025433
BDXO01000001
Bacillota
Staphylococcus aureus M1K155 [BDXO]
1333315
1333232
-
Leu
TAG
[ENA]
¡û
>W1910031852
BECI01000006
Bacillota
Staphylococcus aureus M6K155 [BECI]
51111
51028
-
Leu
TAG
[ENA]
¡û
>C141008133
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
1649525
1649441
-
Leu
TAG
[Ensembl]
¡û
>C141008146
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
909684
909600
-
Leu
TAG
[Ensembl]
¡û
>W1911522626
OFVW01000078
Bacillota
Staphylococcus aureus H1700 [OFVW]
24674
24591
-
Leu
TAG
[ENA]
¡û
>C151036023
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
422620
422704
+
Leu
TAG
[Ensembl]
¡û
>C10103604
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
3992348
3992264
-
Leu
TAG
[Ensembl]
¡û
>C10103617
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
3151476
3151392
-
Leu
TAG
[Ensembl]
¡û
>C11101104
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
427791
427875
+
Leu
TAG
[Ensembl]
¡û
>C11101141
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
422134
422218
+
Leu
TAG
[Ensembl]
¡û
>W11177330
AGAG01000001
Bacillota
Candidatus Arthromitus sp. SFB-mouse sp. SFB-mouse-NYU [AGAG]
1205753
1205669
-
Leu
TAG
[ENA]
¡û
>C161041795
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
1649626
1649542
-
Leu
TAG
-
¡û
>C161041808
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
909743
909659
-
Leu
TAG
-
¡û
>W121006914
AFXS01000008
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
13133
13049
-
Leu
TAG
[ENA]
¡û
>W121006947
AFXT01000055
Bacillota
Candidatus Arthromitus sp. SFB-3 [AFXT]
1412
1328
-
Leu
TAG
[ENA]
¡û
>W121007018
AFXW01000089
Bacillota
Candidatus Arthromitus sp. SFB-co [AFXW]
34736
34652
-
Leu
TAG
[ENA]
¡û
>W121021250
AGVP01000007
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
112389
112473
+
Leu
TAG
[ENA]
¡û
>W1610305314
FFON01000036
Bacillota
Staphylococcus aureus [FFON]
382
465
+
Leu
TAG
[ENA]
¡û
>W1610635730
LITS01000001
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
22895
22979
+
Leu
TAG
[ENA]
¡û
>W1610635754
LITS01000010
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
218739
218823
+
Leu
TAG
[ENA]
¡û
>W1610635818
LITT01000026
Bacillota
Clostridium ljungdahlii [LITT]
20184
20100
-
Leu
TAG
[ENA]
¡û
>W1610635832
LITT01000035
Bacillota
Clostridium ljungdahlii [LITT]
291823
291739
-
Leu
TAG
[ENA]
¡û
>W1610888033
LROR01000034
Bacillota
Clostridium coskatii [LROR]
114880
114964
+
Leu
TAG
[ENA]
¡û
>W1610888043
LROR01000035
Bacillota
Clostridium coskatii [LROR]
20242
20158
-
Leu
TAG
[ENA]
¡û
>W1610888136
LROS01000066
Bacillota
Clostridium ragsdalei P11 [LROS]
20939
20855
-
Leu
TAG
[ENA]
¡û
>W1610888144
LROS01000075
Bacillota
Clostridium ragsdalei P11 [LROS]
27945
27861
-
Leu
TAG
[ENA]
¡û
>W1710305948
FFON01000036
Bacillota
Staphylococcus aureus [FFON]
382
465
+
Leu
TAG
[ENA]
¡û
>W1710588057
FQZB01000010
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
146523
146439
-
Leu
TAG
[ENA]
¡û
>W1710770440
LITR01000001
Bacillota
Clostridium autoethanogenum [LITR]
313546
313630
+
Leu
TAG
[ENA]
¡û
>W1710770466
LITR01000009
Bacillota
Clostridium autoethanogenum [LITR]
209403
209487
+
Leu
TAG
[ENA]
¡û
>W1710770503
LITS01000001
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
22895
22979
+
Leu
TAG
[ENA]
¡û
>W1710770527
LITS01000010
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
218739
218823
+
Leu
TAG
[ENA]
¡û
>W1710770591
LITT01000026
Bacillota
Clostridium ljungdahlii [LITT]
20184
20100
-
Leu
TAG
[ENA]
¡û
>W1710770605
LITT01000035
Bacillota
Clostridium ljungdahlii [LITT]
291823
291739
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK