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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99872 (28 seq.)
>W1711018310
LQWW01000010
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
15763
15679
-
Leu
CAG
[ENA]
¡û
>W1711019445
LQXX01000005
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
14135
14051
-
Leu
CAG
[ENA]
¡û
>W1711229771
LXYS01000002
Alphaproteobacteria
Bartonella apis [LXYS]
38633
38549
-
Leu
CAG
[ENA]
¡û
>W1711229803
LXYT01000001
Alphaproteobacteria
Bartonella apis [LXYT]
449731
449815
+
Leu
CAG
[ENA]
¡û
>W1711229875
LXYU01000003
Alphaproteobacteria
Bartonella apis [LXYU]
49086
49002
-
Leu
CAG
[ENA]
¡û
>W1711738575
MUBG01000001
Alphaproteobacteria
Bartonella sp. WD12.1 [MUBG]
1135278
1135362
+
Leu
CAG
[ENA]
¡û
>C171040315
CP015625
Alphaproteobacteria
Bartonella choladocola BBC0122 [CP015625]
2156505
2156589
+
Leu
CAG
-
¡û
>C171041701
CP015820
Alphaproteobacteria
Bartonella apihabitans BBC0178 [CP015820]
2025493
2025577
+
Leu
CAG
-
¡û
>C171041747
CP015821
Alphaproteobacteria
Bartonella apihabitans BBC0244 [CP015821]
2055488
2055572
+
Leu
CAG
-
¡û
>C171060738
CP017315
Alphaproteobacteria
Candidatus Tokpelaia hoelldoblerii [CP017315]
1093227
1093311
+
Leu
CAG
-
¡û
>W141006816
AGWC01000005
Alphaproteobacteria
Bartonella schoenbuchensis m07a [AGWC]
225654
225738
+
Leu
CAG
[ENA]
¡û
>WENV180298320
OBJA01274237
[OBJA] soil metagenome; sediment, water from around vicinity
2
86
+
Leu
CAG
[ENA]
¢þ
>W141071167
ASIS01000007
Alphaproteobacteria
Bartonella bacilliformis Hosp800-02 [ASIS]
800450
800534
+
Leu
CAG
[ENA]
¡û
>W141071219
ASIT01000012
Alphaproteobacteria
Bartonella bacilliformis CUSCO5 [ASIT]
154453
154537
+
Leu
CAG
[ENA]
¡û
>W141071383
ASIX01000009
Alphaproteobacteria
Bartonella bacilliformis VAB9028 [ASIX]
190374
190458
+
Leu
CAG
[ENA]
¡û
>W141071413
ASIY01000007
Alphaproteobacteria
Bartonella bacilliformis Ver075 [ASIY]
806923
807007
+
Leu
CAG
[ENA]
¡û
>W141071456
ASIZ01000008
Alphaproteobacteria
Bartonella bacilliformis CAR600-02 [ASIZ]
755540
755624
+
Leu
CAG
[ENA]
¡û
>W141554741
JHPP01000001
Alphaproteobacteria
Bartonella bacilliformis San Pedro600-02 [JHPP]
15560
15476
-
Leu
CAG
[ENA]
¡û
>W141554753
JHPQ01000001
Alphaproteobacteria
Bartonella bacilliformis str. Heidi Mejia [JHPQ]
15182
15098
-
Leu
CAG
[ENA]
¡û
>W141554819
JHPR01000005
Alphaproteobacteria
Bartonella bacilliformis Peru-18 [JHPR]
174125
174209
+
Leu
CAG
[ENA]
¡û
>C141001999
CP003789
Alphaproteobacteria
Liberibacter crescens BT-1 [CP003789]
1145260
1145344
+
Leu
CAG
[Ensembl]
¡û
>C161027941
CP010522
Alphaproteobacteria
Liberibacter crescens BT-0 [CP010522]
1198961
1199045
+
Leu
CAG
-
¡û
>C161064359
CP014012
Alphaproteobacteria
Bartonella bacilliformis ATCC 35685D-5 [CP014012]
1130873
1130957
+
Leu
CAG
-
¡û
>W121059390
AIMB01000007
Alphaproteobacteria
Bartonella tamiae Th239 [AIMB]
139694
139610
-
Leu
CAG
[ENA]
¡û
>W121059604
AIMG01000005
Alphaproteobacteria
Bartonella tamiae Th307 [AIMG]
196971
197055
+
Leu
CAG
[ENA]
¡û
>C131002073
CP003123
Alphaproteobacteria
Bartonella australis AUST/NH1 [CP003123]
1180945
1181029
+
Leu
CAG
[Ensembl]
¡û
>W1610866786
LQWW01000010
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
15763
15679
-
Leu
CAG
[ENA]
¡û
>W1610867733
LQXX01000005
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
14135
14051
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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