This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99879 (26 seq.)
>W1711010830
LQRT01000046
Bacteroidota
Aquimarina aggregata RZW4-3-2 [LQRT]
35188
35275
+
Ser
TGA
[ENA]
¡û
>C171092593
CP019388
Bacteroidota
Winogradskyella sp. J14-2 [CP019388]
3283644
3283731
+
Ser
TGA
-
¡û
>WENV180381933
OBOS01050086
[OBOS] marine metagenome; ENVO 00002150
93
180
+
Ser
TGA
[ENA]
¡û
>WENV180398853
OBQB01006307
[OBQB] marine metagenome; ENVO.00002150
230
145
-
Ser
TGA
[ENA]
¡û
>W141238823
BBML01000002
Bacteroidota
Nonlabens tegetincola sediminis [BBML]
301234
301147
-
Ser
TGA
[ENA]
¡û
>WENV170457030
CEVA01242514
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
88
1
-
Ser
TGA
[ENA]
¡û
>WENV170601646
FUWD010185461
[FUWD] metagenome; unknown
126
39
-
Ser
TGA
[ENA]
¡û
>WENV170692893
LGOV01042381
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
11153
11066
-
Ser
TGA
[ENA]
¡û
>WENV170695590
LGVE01125744
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
169
256
+
Ser
TGA
[ENA]
¡û
>WENV170699218
LGVF01506852
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
318
405
+
Ser
TGA
[ENA]
¡û
>C191083496
CP031965
Bacteroidota
Aquimarina sp. AD10 [CP031965]
1654042
1654127
+
Ser
TGA
-
¡û
>W1911535513
OMKE01000023
Bacteroidota
Aquimarina sp. Aq135 [OMKE]
36678
36593
-
Ser
TGA
[ENA]
¡û
>W1810102119
PGUB01000025
Bacteroidota
Aquimarina sp. I32.4 [PGUB]
35575
35490
-
Ser
TGA
[ENA]
¡û
>W1810579873
QERF01000007
Bacteroidota
Winogradskyella tangerina M1309 [QERF]
68286
68371
+
Ser
TGA
[ENA]
¡û
>W1810757330
QPHL01000015
Bacteroidota
Winogradskyella sp. KYW1333 [QPHL]
180706
180621
-
Ser
TGA
[ENA]
¡û
>W2011168487
OMKE01000023
Bacteroidota
Aquimarina sp. Aq135 [OMKE]
36678
36593
-
Ser
TGA
[ENA]
¡û
>W2011367500
RAZY01000012
Bacteroidota
Aquimarina sp. AD10 [RAZY]
90682
90597
-
Ser
TGA
[ENA]
¡û
>W2011752145
SZQF01000006
Bacteroidota
Winogradskyella sp. IMCC33238 [SZQF]
21642
21557
-
Ser
TGA
[ENA]
¡û
>W2012355874
WJYA01000003
Bacteroidota
Winogradskyella sp. ZXX205 [WJYA]
259983
259898
-
Ser
TGA
[ENA]
¡û
>W2110570493
JAGSPD010000001
Bacteroidota
Winogradskyella sp. WHY3 [JAGSPD]
117967
117882
-
Ser
TGA
[ENA]
¡û
>W2110699657
JAIUJS010000009
Bacteroidota
Winogradskyella sp. 2Y89 [JAIUJS]
56562
56647
+
Ser
TGA
[ENA]
¡û
>W2110701264
JAIUZR010000003
Bacteroidota
Lutimonas saemankumensis DP2N0-7 [JAIUZR]
519834
519919
+
Ser
TGA
[ENA]
¡û
>C241145694
CP050461
Bacteroidota
Nonlabens sp. SY33080 [CP050461]
1243784
1243869
+
Ser
TGA
-
¡û
>C161034416
CP011373
Bacteroidota
Nonlabens sp. MIC269 [CP011373]
2433545
2433458
-
Ser
TGA
[Ensembl]
¡û
>C161055943
CP013355
Bacteroidota
Lutibacter profundi LP1 [CP013355]
982606
982691
+
Ser
TGA
[Ensembl]
¡û
>W1610859306
LQRT01000046
Bacteroidota
Aquimarina aggregata RZW4-3-2 [LQRT]
35188
35275
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK