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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99881 (27 seq.)
>W1710805044
LJZR01000024
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
50427
50344
-
Leu
GAG
[ENA]
¡û
>W131036353
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
5624547
5624464
-
Leu
GAG
[ENA]
¡û
>W131036414
ALVP01000013
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
222407
222326
-
Leu
GAG
[ENA]
¡û
>W131063234
ANKN01000135
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
13167
13248
+
Leu
GAG
[ENA]
¡û
>C021079
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
199481
199562
+
Leu
GAG
[Ensembl]
¡û
>C021158
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
1421319
1421238
-
Leu
GAG
[Ensembl]
¡û
>W141022504
AJTX01000276
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [AJTX]
2261
2180
-
Leu
GAG
[ENA]
¡û
>W141038607
ALVZ01000234
Cyanobacteriota
Xenococcus sp. PCC 7305 [ALVZ]
81687
81768
+
Leu
GAG
[ENA]
¡û
>WENV181233871
OFET01000173
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
51402
51319
-
Leu
GAG
[ENA]
¢þ
>W141139149
AWNH01000038
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
30546
30463
-
Leu
GAG
[ENA]
¡û
>W08010875
ABRV01000021
Cyanobacteriota
Synechococcus sp. PCC 7335 [ABRV]
318938
318855
-
Leu
GAG
[ENA]
¡û
>WENV183748558
PPFU01052879
[PPFU] hypolithon metagenome; Antarctic Hypolithon
156
237
+
Leu
GAG
[ENA]
¢þ
>WENV170362411
CETM01070155
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
183
102
-
Leu
GAG
[ENA]
¢þ
>WENV170393164
CEUB01133307
[CEUB] marine metagenome genome assembly TARA_138_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
392
309
-
Leu
GAG
[ENA]
¢þ
>WENV170887535
MDTC01241355
[MDTC] marine metagenome; seawater
1536
1617
+
Leu
GAG
[ENA]
¢þ
>WENV170913368
MDTE01133580
[MDTE] marine metagenome; seawater
376
457
+
Leu
GAG
[ENA]
¢þ
>C191099561
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
2465934
2466015
+
Leu
GAG
-
¡û
>W09101119
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
709940
709859
-
Leu
GAG
[ENA]
¡û
>W1911219928
NRTA01000009
Cyanobacteriota
Leptolyngbya sp. BC1307 [NRTA]
54012
53929
-
Leu
GAG
[ENA]
¡û
>W1810398629
PYER01000111
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
17024
17105
+
Leu
GAG
[ENA]
¡û
>W1810400247
PYFY01000132
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
1887
1806
-
Leu
GAG
[ENA]
¡û
>W1810401288
PYGV01000101
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
12256
12175
-
Leu
GAG
[ENA]
¡û
>W1810523238
QCKJ01000002
Cyanobacteriota
Prochlorococcus sp. AG-409-M05 [QCKJ]
70842
70923
+
Leu
GAG
[ENA]
¡û
>C151009155
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
1843147
1843228
+
Leu
GAG
[Ensembl]
¡û
>C131010425
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
2131877
2131794
-
Leu
GAG
[Ensembl]
¡û
>C131010359
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
1440586
1440667
+
Leu
GAG
[Ensembl]
¡û
>W1610668901
LJZR01000024
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
50427
50344
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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