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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99961 (24 seq.)
>C015245
CP000127
Gammaproteobacteria
Nitrosococcus oceani ATCC 19707 [CP000127]
2916908
2916824
-
Leu
GAG
[Ensembl]
¡û
>WENV180044954
MOXS02063347
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
615
531
-
Leu
GAG
[ENA]
¢þ
>WENV180068840
MPLZ02070512
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
38117
38201
+
Leu
GAG
[ENA]
¢þ
>WENV180071131
MPLZ02216694
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
756
840
+
Leu
GAG
[ENA]
¢þ
>W08011090
ABSG01000025
Gammaproteobacteria
Nitrosococcus oceani C-27 [ABSG]
62119
62038
-
Leu
GAG
[ENA]
¡û
>WENV170150156
CEOC01090885
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3112
3193
+
Leu
GAG
[ENA]
¢þ
>WENV170376171
CETU01043094
[CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
411
330
-
Leu
GAG
[ENA]
¢þ
>WENV170495069
CEVR01157140
[CEVR] marine metagenome genome assembly TARA_148_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1156
1075
-
Leu
GAG
[ENA]
¢þ
>WENV170499016
CEVT01104399
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
212
128
-
Leu
GAG
[ENA]
¢þ
>WENV170582372
FUFK010078380
[FUFK] metagenome; unknown
5058
5139
+
Leu
GAG
[ENA]
¢þ
>WENV170588485
FUFK010565810
[FUFK] metagenome; unknown
852
933
+
Leu
GAG
[ENA]
¢þ
>WENV170760427
LUMT01015534
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
370
289
-
Leu
GAG
[ENA]
¢þ
>WENV170790165
MDSV01061670
[MDSV] marine metagenome; seawater
43191
43107
-
Leu
GAG
[ENA]
¢þ
>WENV170809301
MDSW01129478
[MDSW] marine metagenome; seawater
34549
34633
+
Leu
GAG
[ENA]
¢þ
>WENV170888078
MDTC01250609
[MDTC] marine metagenome; seawater
2226
2310
+
Leu
GAG
[ENA]
¢þ
>WENV170962166
MRWF01007826
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
64164
64248
+
Leu
GAG
[ENA]
¢þ
>WENV170963588
MRWG01000329
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
21653
21737
+
Leu
GAG
[ENA]
¢þ
>C181000492
AP014836
Gammaproteobacteria
Candidatus Nitrosoglobus terrae TAO100 [AP014836]
423053
423137
+
Leu
GAG
-
¡û
>C191157657
CP038033
Gammaproteobacteria
Nitrosococcus wardiae D1FHS [CP038033]
600794
600710
-
Leu
GAG
-
¡û
>W141802336
JPFN01000117
Gammaproteobacteria
Nitrosococcus oceani [JPFN]
23780
23696
-
Leu
GAG
[ENA]
¡û
>W141803331
JPGN01000078
Gammaproteobacteria
Nitrosococcus oceani C-27 [JPGN]
23201
23117
-
Leu
GAG
[ENA]
¡û
>C10109789
CP001798
Gammaproteobacteria
Nitrosococcus halophilus Nc 4 [CP001798]
3814504
3814420
-
Leu
GAG
[Ensembl]
¡û
>C10109912
CP002086
Gammaproteobacteria
Nitrosococcus watsonii C-113 [CP002086]
576162
576246
+
Leu
GAG
[Ensembl]
¡û
>C161050900
CP013099
Gammaproteobacteria
Candidatus Tenderia electrophaga [CP013099]
1349018
1349102
+
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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