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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = AAG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.70910 (1 seq.)
>SRA1018266
SRR035082.265679
454 Sequencing (SRP001803)
57
146
+
Leu
AAG
[SRA]
Identical group No.85889 (1 seq.)
>SRA1018397
SRR035082.284289
454 Sequencing (SRP001803)
209
297
+
Leu
AAG
[SRA]
Identical group No.112549 (9 seq.)
>WENV170626926
FUWD013230125
[FUWD] metagenome; unknown
1679
1765
+
Leu
AAG
[ENA]
¢þ
>WENV170630194
FUWD013298004
[FUWD] metagenome; unknown
10550
10464
-
Leu
AAG
[ENA]
¢þ
>SRA1016745
SRR035082.17647
454 Sequencing (SRP001803)
16
102
+
Leu
AAG
[SRA]
>SRA1017037
SRR035082.70702
454 Sequencing (SRP001803)
206
292
+
Leu
AAG
[SRA]
>SRA1017637
SRR035082.172331
454 Sequencing (SRP001803)
247
333
+
Leu
AAG
[SRA]
>SRA1026602
SRR035085.237883
454 Sequencing (SRP001806)
54
140
+
Leu
AAG
[SRA]
>SRA1035724
SRR035089.362611
454 Sequencing (SRP001810)
220
134
-
Leu
AAG
[SRA]
>SRA1044036
SRR035092.212374
454 Sequencing (SRP001813)
502
416
-
Leu
AAG
[SRA]
>SRA1044254
SRR035092.248666
454 Sequencing (SRP001813)
116
202
+
Leu
AAG
[SRA]
Identical group No.112616 (10 seq.)
>WENV170617862
FUWD012940153
[FUWD] metagenome; unknown
599
514
-
Leu
AAG
[ENA]
¢þ
>SRA1017298
SRR035082.114491
454 Sequencing (SRP001803)
119
34
-
Leu
AAG
[SRA]
>SRA1035743
SRR035089.366761
454 Sequencing (SRP001810)
242
157
-
Leu
AAG
[SRA]
>SRA1039971
SRR035091.4467
454 Sequencing (SRP001812)
194
279
+
Leu
AAG
[SRA]
>SRA1041705
SRR035091.280525
454 Sequencing (SRP001812)
20
105
+
Leu
AAG
[SRA]
>SRA1042073
SRR035091.334758
454 Sequencing (SRP001812)
62
147
+
Leu
AAG
[SRA]
>SRA1043895
SRR035092.191664
454 Sequencing (SRP001813)
89
174
+
Leu
AAG
[SRA]
>SRA1045079
SRR035092.406716
454 Sequencing (SRP001813)
99
184
+
Leu
AAG
[SRA]
>SRA1048847
SRR035094.262502
454 Sequencing (SRP001815)
237
152
-
Leu
AAG
[SRA]
>SRA1050537
SRR035095.286014
454 Sequencing (SRP001816)
103
18
-
Leu
AAG
[SRA]
Identical group No.131492 (2 seq.)
>WENV170599691
FUWD010087029
[FUWD] metagenome; unknown
273
188
-
Leu
AAG
[ENA]
¢þ
>SRA1018634
SRR035082.325621
454 Sequencing (SRP001803)
160
75
-
Leu
AAG
[SRA]
Identical group No.151003 (1 seq.)
>SRA1017926
SRR035082.215286
454 Sequencing (SRP001803)
405
319
-
Leu
AAG
[SRA]
Identical group No.151004 (1 seq.)
>SRA1017942
SRR035082.217806
454 Sequencing (SRP001803)
423
338
-
Leu
AAG
[SRA]
Identical group No.151028 (1 seq.)
>SRA1019042
SRR035082.390613
454 Sequencing (SRP001803)
175
89
-
Leu
AAG
[SRA]
Identical group No.151032 (1 seq.)
>SRA1019135
SRR035082.407877
454 Sequencing (SRP001803)
323
237
-
Leu
AAG
[SRA]
Identical group No.151035 (1 seq.)
>SRA1019316
SRR035082.434440
454 Sequencing (SRP001803)
244
329
+
Leu
AAG
[SRA]
Identical group No.215500 (1 seq.)
>SRA1018033
SRR035082.229075
454 Sequencing (SRP001803)
179
263
+
Leu
AAG
[SRA]
Identical group No.227826 (1 seq.)
>SRA1018936
SRR035082.373085
454 Sequencing (SRP001803)
268
350
+
Leu
AAG
[SRA]
Identical group No.268450 (1 seq.)
>SRA1018888
SRR035082.363867
454 Sequencing (SRP001803)
447
370
-
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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