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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = ACC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.392030 (1 seq.)
>SRA1017026
SRR035082.69786
454 Sequencing (SRP001803)
204
276
+
Gly
ACC
[SRA]
Identical group No.511540 (3 seq.)
>SRA1018965
SRR035082.378377
454 Sequencing (SRP001803)
270
341
+
Gly
ACC
[SRA]
>SRA1053515
SRR035098.425117
454 Sequencing (SRP001819)
320
250
-
Gly
ACC
[SRA]
>SRA1053833
SRR035098.507562
454 Sequencing (SRP001819)
288
217
-
Gly
ACC
[SRA]
Identical group No.516120 (1 seq.)
>SRA1016727
SRR035082.14769
454 Sequencing (SRP001803)
118
45
-
Gly
ACC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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