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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = AGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282299 (6 seq.)
>WENV170600340
FUWD010120825
[FUWD] metagenome; unknown
302
227
-
Thr
AGT
[ENA]
¢þ
>SRA1018509
SRR035082.302389
454 Sequencing (SRP001803)
203
128
-
Thr
AGT
[SRA]
>SRA1034966
SRR035089.208703
454 Sequencing (SRP001810)
31
106
+
Thr
AGT
[SRA]
>SRA1045137
SRR035093.4054
454 Sequencing (SRP001814)
252
177
-
Thr
AGT
[SRA]
>SRA1046954
SRR035093.424735
454 Sequencing (SRP001814)
254
179
-
Thr
AGT
[SRA]
>SRA1051323
SRR035096.138531
454 Sequencing (SRP001817)
129
204
+
Thr
AGT
[SRA]
Identical group No.282468 (3 seq.)
>WENV170611527
FUWD012340979
[FUWD] metagenome; unknown
113
41
-
Thr
AGT
[ENA]
¢þ
>SRA1017469
SRR035082.144334
454 Sequencing (SRP001803)
113
41
-
Thr
AGT
[SRA]
>SRA1036128
SRR035089.450588
454 Sequencing (SRP001810)
262
334
+
Thr
AGT
[SRA]
Identical group No.447970 (138 seq.)
>WENV181309455
OFIW01000182
[OFIW] marine metagenome; seawater
672
743
+
Thr
AGT
[ENA]
¢þ
>WENV181309466
OFIW01000246
[OFIW] marine metagenome; seawater
172
101
-
Thr
AGT
[ENA]
¢þ
>WENV181309583
OFIW01009274
[OFIW] marine metagenome; seawater
526
455
-
Thr
AGT
[ENA]
¢þ
>WENV181321219
OFKL01000005
[OFKL] marine metagenome; seawater
430
359
-
Thr
AGT
[ENA]
¢þ
>WENV181325147
OFLI01010345
[OFLI] seawater metagenome; seawater
449
520
+
Thr
AGT
[ENA]
¢þ
>WENV181385774
OFRK01002416
[OFRK] marine metagenome; sea ice
353
424
+
Thr
AGT
[ENA]
¢þ
>WENV182543072
OJAZ01027735
[OJAZ] seawater metagenome; Sea water
317
388
+
Thr
AGT
[ENA]
¢þ
>WENV183617893
OOFK01000006
[OOFK] marine metagenome; seawater
3130
3201
+
Thr
AGT
[ENA]
¢þ
>WENV183618080
OOFL01017420
[OOFL] marine metagenome; seawater
271
342
+
Thr
AGT
[ENA]
¢þ
>WENV183624174
OOGC01000002
[OOGC] marine metagenome; seawater
4898
4969
+
Thr
AGT
[ENA]
¢þ
>WENV183625713
OOGG01013366
[OOGG] marine metagenome; sea ice
429
358
-
Thr
AGT
[ENA]
¢þ
>WENV183627966
OOGM01000018
[OOGM] marine metagenome; sea ice
7351
7280
-
Thr
AGT
[ENA]
¢þ
>WENV183628940
OOGP01000002
[OOGP] marine metagenome; seawater
10002
9931
-
Thr
AGT
[ENA]
¢þ
>WENV170567410
FLMP01000370
[FLMP] seawater metagenome; seawater
8537
8608
+
Thr
AGT
[ENA]
¢þ
>WENV170568416
FLMP01038119
[FLMP] seawater metagenome; seawater
323
250
-
Thr
AGT
[ENA]
¢þ
>WENV170568868
FLMP01089206
[FLMP] seawater metagenome; seawater
71
142
+
Thr
AGT
[ENA]
¢þ
>SRA1017108
SRR035082.82336
454 Sequencing (SRP001803)
67
140
+
Thr
AGT
[SRA]
>SRA1023402
SRR035084.90804
454 Sequencing (SRP001805)
294
223
-
Thr
AGT
[SRA]
>SRA1023416
SRR035084.94381
454 Sequencing (SRP001805)
90
161
+
Thr
AGT
[SRA]
>SRA1023427
SRR035084.96610
454 Sequencing (SRP001805)
245
174
-
Thr
AGT
[SRA]
>SRA1023496
SRR035084.110981
454 Sequencing (SRP001805)
303
230
-
Thr
AGT
[SRA]
>SRA1023499
SRR035084.112041
454 Sequencing (SRP001805)
386
315
-
Thr
AGT
[SRA]
>SRA1023503
SRR035084.113052
454 Sequencing (SRP001805)
444
373
-
Thr
AGT
[SRA]
>SRA1023567
SRR035084.124476
454 Sequencing (SRP001805)
309
380
+
Thr
AGT
[SRA]
>SRA1023590
SRR035084.132634
454 Sequencing (SRP001805)
10
83
+
Thr
AGT
[SRA]
>SRA1023593
SRR035084.133405
454 Sequencing (SRP001805)
92
163
+
Thr
AGT
[SRA]
>SRA1023605
SRR035084.135925
454 Sequencing (SRP001805)
12
83
+
Thr
AGT
[SRA]
>SRA1023614
SRR035084.137026
454 Sequencing (SRP001805)
80
151
+
Thr
AGT
[SRA]
>SRA1023617
SRR035084.137559
454 Sequencing (SRP001805)
247
176
-
Thr
AGT
[SRA]
>SRA1023622
SRR035084.138683
454 Sequencing (SRP001805)
332
261
-
Thr
AGT
[SRA]
>SRA1023649
SRR035084.143385
454 Sequencing (SRP001805)
210
281
+
Thr
AGT
[SRA]
>SRA1023673
SRR035084.148626
454 Sequencing (SRP001805)
218
291
+
Thr
AGT
[SRA]
>SRA1023710
SRR035084.157394
454 Sequencing (SRP001805)
86
15
-
Thr
AGT
[SRA]
>SRA1023711
SRR035084.157774
454 Sequencing (SRP001805)
153
224
+
Thr
AGT
[SRA]
>SRA1023716
SRR035084.159337
454 Sequencing (SRP001805)
318
247
-
Thr
AGT
[SRA]
>SRA1023726
SRR035084.161742
454 Sequencing (SRP001805)
185
114
-
Thr
AGT
[SRA]
>SRA1023746
SRR035084.163692
454 Sequencing (SRP001805)
388
459
+
Thr
AGT
[SRA]
>SRA1023787
SRR035084.175131
454 Sequencing (SRP001805)
322
395
+
Thr
AGT
[SRA]
>SRA1023796
SRR035084.177950
454 Sequencing (SRP001805)
180
251
+
Thr
AGT
[SRA]
>SRA1023822
SRR035084.184385
454 Sequencing (SRP001805)
62
133
+
Thr
AGT
[SRA]
>SRA1023833
SRR035084.186655
454 Sequencing (SRP001805)
31
102
+
Thr
AGT
[SRA]
>SRA1023834
SRR035084.186731
454 Sequencing (SRP001805)
165
236
+
Thr
AGT
[SRA]
>SRA1023844
SRR035084.188503
454 Sequencing (SRP001805)
301
230
-
Thr
AGT
[SRA]
>SRA1023850
SRR035084.190027
454 Sequencing (SRP001805)
319
247
-
Thr
AGT
[SRA]
>SRA1023855
SRR035084.191399
454 Sequencing (SRP001805)
27
100
+
Thr
AGT
[SRA]
>SRA1023860
SRR035084.193061
454 Sequencing (SRP001805)
101
172
+
Thr
AGT
[SRA]
>SRA1023862
SRR035084.193627
454 Sequencing (SRP001805)
93
164
+
Thr
AGT
[SRA]
>SRA1023887
SRR035084.199933
454 Sequencing (SRP001805)
188
259
+
Thr
AGT
[SRA]
>SRA1023942
SRR035084.212245
454 Sequencing (SRP001805)
384
313
-
Thr
AGT
[SRA]
>SRA1023945
SRR035084.213063
454 Sequencing (SRP001805)
271
342
+
Thr
AGT
[SRA]
>SRA1023976
SRR035084.220361
454 Sequencing (SRP001805)
52
123
+
Thr
AGT
[SRA]
>SRA1023987
SRR035084.221640
454 Sequencing (SRP001805)
73
2
-
Thr
AGT
[SRA]
>SRA1024009
SRR035084.227520
454 Sequencing (SRP001805)
27
98
+
Thr
AGT
[SRA]
>SRA1024022
SRR035084.231495
454 Sequencing (SRP001805)
283
354
+
Thr
AGT
[SRA]
>SRA1024023
SRR035084.231553
454 Sequencing (SRP001805)
93
164
+
Thr
AGT
[SRA]
>SRA1024033
SRR035084.234542
454 Sequencing (SRP001805)
286
357
+
Thr
AGT
[SRA]
>SRA1024050
SRR035084.237458
454 Sequencing (SRP001805)
89
18
-
Thr
AGT
[SRA]
>SRA1024088
SRR035084.248865
454 Sequencing (SRP001805)
372
301
-
Thr
AGT
[SRA]
>SRA1024131
SRR035084.257818
454 Sequencing (SRP001805)
196
267
+
Thr
AGT
[SRA]
>SRA1024145
SRR035084.259444
454 Sequencing (SRP001805)
336
263
-
Thr
AGT
[SRA]
>SRA1024148
SRR035084.260346
454 Sequencing (SRP001805)
119
190
+
Thr
AGT
[SRA]
>SRA1024156
SRR035084.261919
454 Sequencing (SRP001805)
370
299
-
Thr
AGT
[SRA]
>SRA1024167
SRR035084.265204
454 Sequencing (SRP001805)
261
332
+
Thr
AGT
[SRA]
>SRA1024219
SRR035084.274574
454 Sequencing (SRP001805)
397
324
-
Thr
AGT
[SRA]
>SRA1024238
SRR035084.278940
454 Sequencing (SRP001805)
78
149
+
Thr
AGT
[SRA]
>SRA1024242
SRR035084.279661
454 Sequencing (SRP001805)
310
237
-
Thr
AGT
[SRA]
>SRA1024246
SRR035084.281024
454 Sequencing (SRP001805)
52
125
+
Thr
AGT
[SRA]
>SRA1024266
SRR035084.286701
454 Sequencing (SRP001805)
275
346
+
Thr
AGT
[SRA]
>SRA1024304
SRR035084.294178
454 Sequencing (SRP001805)
80
151
+
Thr
AGT
[SRA]
>SRA1024356
SRR035084.306621
454 Sequencing (SRP001805)
127
54
-
Thr
AGT
[SRA]
>SRA1024381
SRR035084.313512
454 Sequencing (SRP001805)
99
28
-
Thr
AGT
[SRA]
>SRA1024405
SRR035084.317177
454 Sequencing (SRP001805)
93
164
+
Thr
AGT
[SRA]
>SRA1024456
SRR035084.329526
454 Sequencing (SRP001805)
266
337
+
Thr
AGT
[SRA]
>SRA1024462
SRR035084.330904
454 Sequencing (SRP001805)
355
284
-
Thr
AGT
[SRA]
>SRA1024469
SRR035084.332465
454 Sequencing (SRP001805)
109
36
-
Thr
AGT
[SRA]
>SRA1024476
SRR035084.333508
454 Sequencing (SRP001805)
416
345
-
Thr
AGT
[SRA]
>SRA1024500
SRR035084.338936
454 Sequencing (SRP001805)
123
194
+
Thr
AGT
[SRA]
>SRA1024515
SRR035084.341716
454 Sequencing (SRP001805)
333
262
-
Thr
AGT
[SRA]
>SRA1024516
SRR035084.341996
454 Sequencing (SRP001805)
358
287
-
Thr
AGT
[SRA]
>SRA1024536
SRR035084.345312
454 Sequencing (SRP001805)
97
26
-
Thr
AGT
[SRA]
>SRA1024543
SRR035084.346270
454 Sequencing (SRP001805)
311
382
+
Thr
AGT
[SRA]
>SRA1024565
SRR035084.348801
454 Sequencing (SRP001805)
181
254
+
Thr
AGT
[SRA]
>SRA1024580
SRR035084.353996
454 Sequencing (SRP001805)
27
98
+
Thr
AGT
[SRA]
>SRA1024586
SRR035084.355044
454 Sequencing (SRP001805)
274
345
+
Thr
AGT
[SRA]
>SRA1024602
SRR035084.358337
454 Sequencing (SRP001805)
24
95
+
Thr
AGT
[SRA]
>SRA1024611
SRR035084.360837
454 Sequencing (SRP001805)
330
401
+
Thr
AGT
[SRA]
>SRA1024615
SRR035084.361531
454 Sequencing (SRP001805)
298
369
+
Thr
AGT
[SRA]
>SRA1024632
SRR035084.365198
454 Sequencing (SRP001805)
104
177
+
Thr
AGT
[SRA]
>SRA1024644
SRR035084.367093
454 Sequencing (SRP001805)
341
412
+
Thr
AGT
[SRA]
>SRA1024670
SRR035084.372778
454 Sequencing (SRP001805)
312
383
+
Thr
AGT
[SRA]
>SRA1024689
SRR035084.377410
454 Sequencing (SRP001805)
221
295
+
Thr
AGT
[SRA]
>SRA1024694
SRR035084.378177
454 Sequencing (SRP001805)
287
358
+
Thr
AGT
[SRA]
>SRA1024727
SRR035084.388673
454 Sequencing (SRP001805)
93
164
+
Thr
AGT
[SRA]
>SRA1024787
SRR035084.400740
454 Sequencing (SRP001805)
148
77
-
Thr
AGT
[SRA]
>SRA1024816
SRR035084.411297
454 Sequencing (SRP001805)
262
333
+
Thr
AGT
[SRA]
>SRA1024818
SRR035084.412103
454 Sequencing (SRP001805)
129
200
+
Thr
AGT
[SRA]
>SRA1024823
SRR035084.413439
454 Sequencing (SRP001805)
292
363
+
Thr
AGT
[SRA]
>SRA1024830
SRR035084.415416
454 Sequencing (SRP001805)
354
281
-
Thr
AGT
[SRA]
>SRA1024867
SRR035084.424430
454 Sequencing (SRP001805)
132
205
+
Thr
AGT
[SRA]
>SRA1024951
SRR035084.444722
454 Sequencing (SRP001805)
246
319
+
Thr
AGT
[SRA]
>SRA1024963
SRR035084.448108
454 Sequencing (SRP001805)
336
407
+
Thr
AGT
[SRA]
>SRA1024983
SRR035084.453103
454 Sequencing (SRP001805)
283
354
+
Thr
AGT
[SRA]
>SRA1025013
SRR035084.459229
454 Sequencing (SRP001805)
312
383
+
Thr
AGT
[SRA]
>SRA1025033
SRR035084.464106
454 Sequencing (SRP001805)
90
17
-
Thr
AGT
[SRA]
>SRA1025042
SRR035084.466462
454 Sequencing (SRP001805)
78
149
+
Thr
AGT
[SRA]
>SRA1025080
SRR035084.479726
454 Sequencing (SRP001805)
116
45
-
Thr
AGT
[SRA]
>SRA1025131
SRR035084.492766
454 Sequencing (SRP001805)
196
123
-
Thr
AGT
[SRA]
>SRA1025146
SRR035084.497107
454 Sequencing (SRP001805)
115
44
-
Thr
AGT
[SRA]
>SRA1025147
SRR035084.498587
454 Sequencing (SRP001805)
145
216
+
Thr
AGT
[SRA]
>SRA1025168
SRR035084.504597
454 Sequencing (SRP001805)
263
334
+
Thr
AGT
[SRA]
>SRA1025249
SRR035084.528013
454 Sequencing (SRP001805)
119
190
+
Thr
AGT
[SRA]
>SRA1025261
SRR035084.531441
454 Sequencing (SRP001805)
89
18
-
Thr
AGT
[SRA]
>SRA1025274
SRR035084.535606
454 Sequencing (SRP001805)
231
160
-
Thr
AGT
[SRA]
>SRA1025278
SRR035084.536433
454 Sequencing (SRP001805)
122
51
-
Thr
AGT
[SRA]
>SRA1025301
SRR035084.544820
454 Sequencing (SRP001805)
124
195
+
Thr
AGT
[SRA]
>SRA1025319
SRR035084.551190
454 Sequencing (SRP001805)
267
338
+
Thr
AGT
[SRA]
>SRA1025348
SRR035084.558954
454 Sequencing (SRP001805)
137
208
+
Thr
AGT
[SRA]
>SRA1025380
SRR035084.575122
454 Sequencing (SRP001805)
198
125
-
Thr
AGT
[SRA]
>SRA1025384
SRR035084.575443
454 Sequencing (SRP001805)
73
2
-
Thr
AGT
[SRA]
>SRA1025397
SRR035084.580225
454 Sequencing (SRP001805)
154
225
+
Thr
AGT
[SRA]
>SRA1025409
SRR035084.583649
454 Sequencing (SRP001805)
109
38
-
Thr
AGT
[SRA]
>SRA1025410
SRR035084.584552
454 Sequencing (SRP001805)
303
230
-
Thr
AGT
[SRA]
>SRA1025412
SRR035084.584805
454 Sequencing (SRP001805)
52
123
+
Thr
AGT
[SRA]
>SRA1027922
SRR035086.219275
454 Sequencing (SRP001807)
165
238
+
Thr
AGT
[SRA]
>SRA1028048
SRR035086.246788
454 Sequencing (SRP001807)
294
223
-
Thr
AGT
[SRA]
>SRA1028198
SRR035086.274398
454 Sequencing (SRP001807)
197
271
+
Thr
AGT
[SRA]
>SRA1050782
SRR035096.19818
454 Sequencing (SRP001817)
255
329
+
Thr
AGT
[SRA]
>SRA1051214
SRR035096.110677
454 Sequencing (SRP001817)
71
144
+
Thr
AGT
[SRA]
>SRA1051290
SRR035096.131495
454 Sequencing (SRP001817)
426
497
+
Thr
AGT
[SRA]
>SRA1051366
SRR035096.154125
454 Sequencing (SRP001817)
307
378
+
Thr
AGT
[SRA]
>SRA1051677
SRR035098.56554
454 Sequencing (SRP001819)
268
197
-
Thr
AGT
[SRA]
>SRA1051873
SRR035098.91480
454 Sequencing (SRP001819)
331
402
+
Thr
AGT
[SRA]
>SRA1052603
SRR035098.235919
454 Sequencing (SRP001819)
190
261
+
Thr
AGT
[SRA]
>SRA1052676
SRR035098.251405
454 Sequencing (SRP001819)
156
229
+
Thr
AGT
[SRA]
>SRA1052755
SRR035098.267171
454 Sequencing (SRP001819)
338
267
-
Thr
AGT
[SRA]
>SRA1052768
SRR035098.271976
454 Sequencing (SRP001819)
415
344
-
Thr
AGT
[SRA]
>SRA1053227
SRR035098.364627
454 Sequencing (SRP001819)
261
188
-
Thr
AGT
[SRA]
>SRA1053693
SRR035098.469123
454 Sequencing (SRP001819)
261
188
-
Thr
AGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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