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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = CTA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150986 (1 seq.)
>SRA1017305
SRR035082.116030
454 Sequencing (SRP001803)
183
269
+
Sup
CTA
[SRA]
Identical group No.234989 (1 seq.)
>SRA1016770
SRR035082.25675
454 Sequencing (SRP001803)
100
21
-
Sup
CTA
[SRA]
Identical group No.268429 (1 seq.)
>SRA1017986
SRR035082.224785
454 Sequencing (SRP001803)
174
248
+
Sup
CTA
[SRA]
Identical group No.439667 (1 seq.)
>SRA1017020
SRR035082.69285
454 Sequencing (SRP001803)
151
75
-
Sup
CTA
[SRA]
Identical group No.640075 (1 seq.)
>SRA1018099
SRR035082.240471
454 Sequencing (SRP001803)
365
440
+
Sup
CTA
[SRA]
Identical group No.640101 (1 seq.)
>SRA1018321
SRR035082.272854
454 Sequencing (SRP001803)
154
229
+
Sup
CTA
[SRA]
Identical group No.640242 (1 seq.)
>SRA1018536
SRR035082.306400
454 Sequencing (SRP001803)
15
88
+
Stop
CTA
[SRA]
Identical group No.672245 (2 seq.)
>SRA1018971
SRR035082.379004
454 Sequencing (SRP001803)
254
328
+
Sup
CTA
[SRA]
>SRA1028851
SRR035087.22194
454 Sequencing (SRP001808)
247
321
+
Sup
CTA
[SRA]
Identical group No.771353 (1 seq.)
>SRA1019713
SRR035082.509657
454 Sequencing (SRP001803)
289
218
-
Sup
CTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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