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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = ACG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257984 (1 seq.)
>SRA1024479
SRR035084.334021
454 Sequencing (SRP001805)
240
317
+
Arg
ACG
[SRA]
Identical group No.381093 (1 seq.)
>SRA1023680
SRR035084.149399
454 Sequencing (SRP001805)
317
393
+
Arg
ACG
[SRA]
Identical group No.381113 (1 seq.)
>SRA1024274
SRR035084.289877
454 Sequencing (SRP001805)
294
370
+
Arg
ACG
[SRA]
Identical group No.573386 (1 seq.)
>SRA1023644
SRR035084.141747
454 Sequencing (SRP001805)
194
269
+
Arg
ACG
[SRA]
Identical group No.573394 (1 seq.)
>SRA1023964
SRR035084.218316
454 Sequencing (SRP001805)
304
229
-
Arg
ACG
[SRA]
Identical group No.726912 (1 seq.)
>SRA1024573
SRR035084.352994
454 Sequencing (SRP001805)
310
238
-
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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