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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = AGT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381108 (1 seq.)
>SRA1024176
SRR035084.267088
454 Sequencing (SRP001805)
209
284
+
Thr
AGT
[SRA]
Identical group No.573418 (1 seq.)
>SRA1024720
SRR035084.384864
454 Sequencing (SRP001805)
327
399
+
Thr
AGT
[SRA]
Identical group No.573425 (1 seq.)
>SRA1024826
SRR035084.413979
454 Sequencing (SRP001805)
311
383
+
Thr
AGT
[SRA]
Identical group No.573437 (1 seq.)
>SRA1025092
SRR035084.482828
454 Sequencing (SRP001805)
48
120
+
Thr
AGT
[SRA]
Identical group No.726877 (8 seq.)
>SRA1023402
SRR035084.90804
454 Sequencing (SRP001805)
294
223
-
Thr
AGT
[SRA]
>SRA1023710
SRR035084.157394
454 Sequencing (SRP001805)
86
15
-
Thr
AGT
[SRA]
>SRA1023716
SRR035084.159337
454 Sequencing (SRP001805)
318
247
-
Thr
AGT
[SRA]
>SRA1023976
SRR035084.220361
454 Sequencing (SRP001805)
52
123
+
Thr
AGT
[SRA]
>SRA1024131
SRR035084.257818
454 Sequencing (SRP001805)
196
267
+
Thr
AGT
[SRA]
>SRA1024238
SRR035084.278940
454 Sequencing (SRP001805)
78
149
+
Thr
AGT
[SRA]
>SRA1024611
SRR035084.360837
454 Sequencing (SRP001805)
330
401
+
Thr
AGT
[SRA]
>SRA1024644
SRR035084.367093
454 Sequencing (SRP001805)
341
412
+
Thr
AGT
[SRA]
Identical group No.726898 (1 seq.)
>SRA1023850
SRR035084.190027
454 Sequencing (SRP001805)
319
247
-
Thr
AGT
[SRA]
Identical group No.726915 (1 seq.)
>SRA1024692
SRR035084.377620
454 Sequencing (SRP001805)
244
315
+
Thr
AGT
[SRA]
Identical group No.726933 (1 seq.)
>SRA1025285
SRR035084.539437
454 Sequencing (SRP001805)
191
262
+
Thr
AGT
[SRA]
Identical group No.812664 (1 seq.)
>SRA1024710
SRR035084.381872
454 Sequencing (SRP001805)
242
314
+
Thr
AGT
[SRA]
Identical group No.812673 (1 seq.)
>SRA1025113
SRR035084.487576
454 Sequencing (SRP001805)
98
28
-
Thr
AGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK