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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CAA
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.136911 (1 seq.)
>SRA1024422
SRR035084.320260
454 Sequencing (SRP001805)
128
214
+
Leu
CAA
[SRA]
Identical group No.169141 (1 seq.)
>SRA1023103
SRR035084.3321
454 Sequencing (SRP001805)
391
475
+
Leu
CAA
[SRA]
Identical group No.169143 (1 seq.)
>SRA1023388
SRR035084.86347
454 Sequencing (SRP001805)
377
462
+
Leu
CAA
[SRA]
Identical group No.169148 (1 seq.)
>SRA1024403
SRR035084.316838
454 Sequencing (SRP001805)
396
310
-
Leu
CAA
[SRA]
Identical group No.169150 (1 seq.)
>SRA1024650
SRR035084.368980
454 Sequencing (SRP001805)
13
98
+
Leu
CAA
[SRA]
Identical group No.169186 (1 seq.)
>SRA1024558
SRR035084.347559
454 Sequencing (SRP001805)
452
534
+
Leu
CAA
[SRA]
Identical group No.202982 (1 seq.)
>SRA1023594
SRR035084.133560
454 Sequencing (SRP001805)
269
185
-
Leu
CAA
[SRA]
Identical group No.202986 (1 seq.)
>SRA1024623
SRR035084.361981
454 Sequencing (SRP001805)
458
375
-
Leu
CAA
[SRA]
Identical group No.202989 (1 seq.)
>SRA1024792
SRR035084.403110
454 Sequencing (SRP001805)
155
239
+
Leu
CAA
[SRA]
Identical group No.224208 (1 seq.)
>SRA1023808
SRR035084.180973
454 Sequencing (SRP001805)
340
423
+
Leu
CAA
[SRA]
Identical group No.224212 (1 seq.)
>SRA1025137
SRR035084.495351
454 Sequencing (SRP001805)
205
288
+
Leu
CAA
[SRA]
Identical group No.238080 (1 seq.)
>SRA1023845
SRR035084.188604
454 Sequencing (SRP001805)
279
357
+
Leu
CAA
[SRA]
Identical group No.573390 (1 seq.)
>SRA1023719
SRR035084.160743
454 Sequencing (SRP001805)
22
97
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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