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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CCA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381073 (1 seq.)
>SRA1023139
SRR035084.16263
454 Sequencing (SRP001805)
206
132
-
Trp
CCA
[SRA]
Identical group No.381114 (1 seq.)
>SRA1024307
SRR035084.295079
454 Sequencing (SRP001805)
310
234
-
Trp
CCA
[SRA]
Identical group No.381142 (1 seq.)
>SRA1025015
SRR035084.459438
454 Sequencing (SRP001805)
174
98
-
Trp
CCA
[SRA]
Identical group No.381389 (3 seq.)
>SRA1023506
SRR035084.113471
454 Sequencing (SRP001805)
342
418
+
Trp
CCA
[SRA]
>SRA1024275
SRR035084.290083
454 Sequencing (SRP001805)
331
407
+
Trp
CCA
[SRA]
>SRA1024724
SRR035084.387472
454 Sequencing (SRP001805)
413
489
+
Trp
CCA
[SRA]
Identical group No.573376 (1 seq.)
>SRA1023482
SRR035084.108486
454 Sequencing (SRP001805)
418
490
+
Trp
CCA
[SRA]
Identical group No.726914 (1 seq.)
>SRA1024631
SRR035084.364852
454 Sequencing (SRP001805)
94
166
+
Trp
CCA
[SRA]
Identical group No.726923 (1 seq.)
>SRA1025022
SRR035084.461266
454 Sequencing (SRP001805)
422
348
-
Trp
CCA
[SRA]
Identical group No.812644 (1 seq.)
>SRA1023122
SRR035084.8605
454 Sequencing (SRP001805)
356
429
+
Trp
CCA
[SRA]
Identical group No.812655 (1 seq.)
>SRA1023785
SRR035084.174860
454 Sequencing (SRP001805)
97
170
+
Trp
CCA
[SRA]
Identical group No.812662 (1 seq.)
>SRA1024556
SRR035084.347339
454 Sequencing (SRP001805)
218
291
+
Trp
CCA
[SRA]
Identical group No.812672 (1 seq.)
>SRA1025082
SRR035084.479912
454 Sequencing (SRP001805)
261
188
-
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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