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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.573382 (1 seq.)
>SRA1023580
SRR035084.128970
454 Sequencing (SRP001805)
78
152
+
Arg
CCG
[SRA]
Identical group No.667386 (24 seq.)
>WENV181323542
OFKY01005212
[OFKY] marine metagenome; sea ice
783
711
-
Arg
CCG
[ENA]
¢þ
>WENV181324516
OFLF01000289
[OFLF] marine metagenome; melt pond
676
748
+
Arg
CCG
[ENA]
¢þ
>WENV181324891
OFLH01031680
[OFLH] marine metagenome; sea ice
279
351
+
Arg
CCG
[ENA]
¢þ
>WENV181325041
OFLI01002713
[OFLI] seawater metagenome; seawater
490
562
+
Arg
CCG
[ENA]
¢þ
>WENV181325634
OFLJ01010057
[OFLJ] seawater metagenome; seawater
267
339
+
Arg
CCG
[ENA]
¢þ
>WENV181392886
OFRX01013578
[OFRX] seawater metagenome; seawater
719
791
+
Arg
CCG
[ENA]
¢þ
>WENV183618483
OOFO01002730
[OOFO] marine metagenome; seawater
490
562
+
Arg
CCG
[ENA]
¢þ
>WENV183619493
OOFQ01010100
[OOFQ] marine metagenome; seawater
267
339
+
Arg
CCG
[ENA]
¢þ
>WENV183620385
OOFR01046541
[OOFR] marine metagenome; seawater
409
481
+
Arg
CCG
[ENA]
¢þ
>WENV183620878
OOFT01000002
[OOFT] marine metagenome; sea ice
86729
86801
+
Arg
CCG
[ENA]
¢þ
>WENV183629248
OOGP01013608
[OOGP] marine metagenome; seawater
303
231
-
Arg
CCG
[ENA]
¢þ
>WENV170568592
FLMP01053497
[FLMP] seawater metagenome; seawater
738
664
-
Arg
CCG
[ENA]
¢þ
>WENV170614942
FUWD012844853
[FUWD] metagenome; unknown
16885
16959
+
Arg
CCG
[ENA]
¢þ
>WENV170949446
MEHZ011419342
[MEHZ] marine metagenome; marine surface water
830
756
-
Arg
CCG
[ENA]
¢þ
>SRA1023163
SRR035084.24540
454 Sequencing (SRP001805)
242
168
-
Arg
CCG
[SRA]
>SRA1023387
SRR035084.84859
454 Sequencing (SRP001805)
240
166
-
Arg
CCG
[SRA]
>SRA1023814
SRR035084.182308
454 Sequencing (SRP001805)
42
116
+
Arg
CCG
[SRA]
>SRA1024200
SRR035084.271140
454 Sequencing (SRP001805)
236
310
+
Arg
CCG
[SRA]
>SRA1024975
SRR035084.451654
454 Sequencing (SRP001805)
127
201
+
Arg
CCG
[SRA]
>SRA1024984
SRR035084.453237
454 Sequencing (SRP001805)
316
242
-
Arg
CCG
[SRA]
>SRA1045682
SRR035093.148167
454 Sequencing (SRP001814)
499
425
-
Arg
CCG
[SRA]
>SRA1053564
SRR035098.438933
454 Sequencing (SRP001819)
172
98
-
Arg
CCG
[SRA]
>SRA1053613
SRR035098.452358
454 Sequencing (SRP001819)
173
99
-
Arg
CCG
[SRA]
>W121063465
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
469602
469528
-
Arg
CCG
[ENA]
¡û
Identical group No.726907 (1 seq.)
>SRA1024257
SRR035084.284041
454 Sequencing (SRP001805)
237
309
+
Arg
CCG
[SRA]
Identical group No.726911 (1 seq.)
>SRA1024514
SRR035084.341643
454 Sequencing (SRP001805)
224
297
+
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK