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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355264 (1 seq.)
>SRA1023580
SRR035084.128970
454 Sequencing (SRP001805)
78
152
+
Arg
CCG
[SRA]
Identical group No.412167 (37 seq.)
>W131217051
ATWJ01000014
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
120114
120188
+
Arg
CCG
[ENA]
¡û
>W131217869
ATXE01000002
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
505222
505296
+
Arg
CCG
[ENA]
¡û
>W131230901
AUIA01000003
Actinomycetota
Propionicicella superfundia DSM 22317 [AUIA]
367734
367808
+
Arg
CCG
[ENA]
¡û
>WENV180212480
OBAN01061681
[OBAN] marine metagenome; ENVO 00002150
165
237
+
Arg
CCG
[ENA]
¢þ
>WENV180284851
OBID01136830
[OBID] metagenome; sludge
233
308
+
Arg
CCG
[ENA]
¢þ
>WENV180291022
OBIV01000421
[OBIV] soil metagenome; Clay
204
276
+
Arg
CCG
[ENA]
¢þ
>WENV180363940
OBNZ01027755
[OBNZ] marine metagenome; ENVO:00002010
211
283
+
Arg
CCG
[ENA]
¢þ
>WENV180393003
OBPP01049655
[OBPP] marine metagenome; ENVO:00002042
237
165
-
Arg
CCG
[ENA]
¢þ
>WENV180594798
OCPA01010839
[OCPA] marine metagenome; ENVO:00002010
220
292
+
Arg
CCG
[ENA]
¢þ
>WENV180650243
OCSY01000434
[OCSY] marine metagenome; 30 L Plastic container
642
570
-
Arg
CCG
[ENA]
¢þ
>WENV180690259
OCZS010001443
[OCZS] soil metagenome; soil
984
910
-
Arg
CCG
[ENA]
¢þ
>WENV180695778
OCZS013949241
[OCZS] soil metagenome; soil
4
78
+
Arg
CCG
[ENA]
¢þ
>WENV181189835
OEOF01251703
[OEOF] activated sludge metagenome; Activated Sludge
63
135
+
Arg
CCG
[ENA]
¢þ
>WENV181193090
OEPS011439629
[OEPS] soil metagenome; soil
46
118
+
Arg
CCG
[ENA]
¢þ
>WENV181292023
OFHD01021452
[OFHD] soil metagenome; Clay
191
264
+
Arg
CCG
[ENA]
¢þ
>WENV181311615
OFJB01005676
[OFJB] sludge metagenome; sludge
2045
2119
+
Arg
CCG
[ENA]
¢þ
>WENV181376665
OFQZ01086888
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
539
465
-
Arg
CCG
[ENA]
¢þ
>WENV181389659
OFRO01001499
[OFRO] wastewater metagenome; Exp Tend NO 10WW
6387
6313
-
Arg
CCG
[ENA]
¢þ
>WENV183619493
OOFQ01010100
[OOFQ] marine metagenome; seawater
267
339
+
Arg
CCG
[ENA]
¢þ
>WENV183704218
PDWI01000095
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17058
16984
-
Arg
CCG
[ENA]
¢þ
>WENV183708614
PDWI01018006
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7889
7817
-
Arg
CCG
[ENA]
¢þ
>WENV183710192
PDWI01041444
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1886
1813
-
Arg
CCG
[ENA]
¢þ
>WENV183719623
PDWJ01017268
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3935
4009
+
Arg
CCG
[ENA]
¢þ
>WENV183719901
PDWJ01022601
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3897
3971
+
Arg
CCG
[ENA]
¢þ
>C181197152
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
1842623
1842695
+
Arg
CCG
-
¡û
>W1910377730
FUKQ01000032
Actinomycetota
Luteococcus japonicus LSP_Lj1 [FUKQ]
185440
185514
+
Arg
CCG
[ENA]
¡û
>W1911615585
PPCV01000001
Actinomycetota
Propioniciclava flava VG341 [PPCV]
123496
123422
-
Arg
CCG
[ENA]
¡û
>W1810861665
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
3048667
3048595
-
Arg
CCG
[ENA]
¡û
>SRA1024257
SRR035084.284041
454 Sequencing (SRP001805)
237
309
+
Arg
CCG
[SRA]
>C151077126
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
4130491
4130565
+
Arg
CCG
-
¡û
>SRA1045682
SRR035093.148167
454 Sequencing (SRP001814)
499
425
-
Arg
CCG
[SRA]
>SRA1047538
SRR035093.571164
454 Sequencing (SRP001814)
259
184
-
Arg
CCG
[SRA]
>W1510061657
CCYM01000003
Actinomycetota
Nigerium massiliense SIT7 [CCYM]
116196
116122
-
Arg
CCG
[ENA]
¡û
>C11114884
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
3263790
3263862
+
Arg
CCG
[Ensembl]
¡û
>W1610625724
LIBA01000071
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
3170
3096
-
Arg
CCG
[ENA]
¡û
>W1710550134
FOFA01000003
Actinomycetota
Microlunatus flavus flava [FOFA]
84388
84314
-
Arg
CCG
[ENA]
¡û
>W1710756851
LIBA01000071
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
3170
3096
-
Arg
CCG
[ENA]
¡û
Identical group No.424403 (29 seq.)
>W1711386872
MEFY01000001
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
222331
222405
+
Arg
CCG
[ENA]
¡û
>W1711505530
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
222055
222129
+
Arg
CCG
[ENA]
¡û
>WENV180102849
OAOZ01032395
[OAOZ] marine metagenome; ENVO:00002010
155
227
+
Arg
CCG
[ENA]
¢þ
>WENV180399116
OBQG01000210
[OBQG] marine metagenome; ENV:00002010
1360
1432
+
Arg
CCG
[ENA]
¢þ
>WENV180399486
OBQO01000004
[OBQO] marine metagenome; ENVO:00002010
40206
40134
-
Arg
CCG
[ENA]
¢þ
>WENV181323542
OFKY01005212
[OFKY] marine metagenome; sea ice
783
711
-
Arg
CCG
[ENA]
¢þ
>WENV181324516
OFLF01000289
[OFLF] marine metagenome; melt pond
676
748
+
Arg
CCG
[ENA]
¢þ
>WENV181324891
OFLH01031680
[OFLH] marine metagenome; sea ice
279
351
+
Arg
CCG
[ENA]
¢þ
>WENV181325041
OFLI01002713
[OFLI] seawater metagenome; seawater
490
562
+
Arg
CCG
[ENA]
¢þ
>WENV181325634
OFLJ01010057
[OFLJ] seawater metagenome; seawater
267
339
+
Arg
CCG
[ENA]
¢þ
>WENV181368542
OFQL01019752
[OFQL] freshwater metagenome; Freshwater Lake
155
83
-
Arg
CCG
[ENA]
¢þ
>WENV181370384
OFQS01007279
[OFQS] freshwater metagenome; Freshwater Lake
883
811
-
Arg
CCG
[ENA]
¢þ
>WENV181392886
OFRX01013578
[OFRX] seawater metagenome; seawater
719
791
+
Arg
CCG
[ENA]
¢þ
>WENV183620385
OOFR01046541
[OOFR] marine metagenome; seawater
409
481
+
Arg
CCG
[ENA]
¢þ
>WENV183620878
OOFT01000002
[OOFT] marine metagenome; sea ice
86729
86801
+
Arg
CCG
[ENA]
¢þ
>WENV183629248
OOGP01013608
[OOGP] marine metagenome; seawater
303
231
-
Arg
CCG
[ENA]
¢þ
>WENV170568592
FLMP01053497
[FLMP] seawater metagenome; seawater
738
664
-
Arg
CCG
[ENA]
¢þ
>WENV170614942
FUWD012844853
[FUWD] metagenome; unknown
16885
16959
+
Arg
CCG
[ENA]
¢þ
>WENV170949446
MEHZ011419342
[MEHZ] marine metagenome; marine surface water
830
756
-
Arg
CCG
[ENA]
¢þ
>SRA1023163
SRR035084.24540
454 Sequencing (SRP001805)
242
168
-
Arg
CCG
[SRA]
>SRA1023387
SRR035084.84859
454 Sequencing (SRP001805)
240
166
-
Arg
CCG
[SRA]
>SRA1023814
SRR035084.182308
454 Sequencing (SRP001805)
42
116
+
Arg
CCG
[SRA]
>SRA1024200
SRR035084.271140
454 Sequencing (SRP001805)
236
310
+
Arg
CCG
[SRA]
>SRA1024975
SRR035084.451654
454 Sequencing (SRP001805)
127
201
+
Arg
CCG
[SRA]
>SRA1024984
SRR035084.453237
454 Sequencing (SRP001805)
316
242
-
Arg
CCG
[SRA]
>SRA1053564
SRR035098.438933
454 Sequencing (SRP001819)
172
98
-
Arg
CCG
[SRA]
>SRA1053613
SRR035098.452358
454 Sequencing (SRP001819)
173
99
-
Arg
CCG
[SRA]
>WENV043741
AACY022354666
Marine microbial communities from Global Ocean Sampling (GOS)
537
463
-
Arg
CCG
[ENA]
>W121063465
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
469602
469528
-
Arg
CCG
[ENA]
¡û
Identical group No.447996 (1 seq.)
>SRA1024514
SRR035084.341643
454 Sequencing (SRP001805)
224
297
+
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK