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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257994 (1 seq.)
>SRA1025018
SRR035084.459983
454 Sequencing (SRP001805)
205
282
+
Arg
CCT
[SRA]
Identical group No.381097 (2 seq.)
>SRA1023827
SRR035084.185448
454 Sequencing (SRP001805)
2
78
+
Arg
CCT
[SRA]
>SRA1025366
SRR035084.565806
454 Sequencing (SRP001805)
2
78
+
Arg
CCT
[SRA]
Identical group No.381136 (1 seq.)
>SRA1024906
SRR035084.433813
454 Sequencing (SRP001805)
78
151
+
Arg
CCT
[SRA]
Identical group No.726899 (1 seq.)
>SRA1023981
SRR035084.220737
454 Sequencing (SRP001805)
248
322
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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