tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001805)

Anticodon = CGC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.326837 (22 seq.)
>WENV180360620 OBNU01004874 [OBNU] marine metagenome; ENVO:00000021 'freshwater lake 883 810 - Ala CGC [ENA] ¢þ
>WENV180361961 OBNW01014311 [OBNW] marine metagenome; ENVO:00002010, 'SEA WATER 226 153 - Ala CGC [ENA] ¢þ
>WENV180394464 OBPS01007268 [OBPS] marine metagenome; ENVO:00002010 seawater 950 1023 + Ala CGC [ENA] ¢þ
>WENV180395263 OBPT01005577 [OBPT] marine metagenome; ENVO:00002010 seawater 443 516 + Ala CGC [ENA] ¢þ
>WENV181325993 OFLJ01063506 [OFLJ] seawater metagenome; seawater 360 287 - Ala CGC [ENA] ¢þ
>WENV170569853 FLMP01327579 [FLMP] seawater metagenome; seawater 360 285 - Ala CGC [ENA] ¢þ
>WENV170571390 FLOH01000146 [FLOH] marine metagenome; water 30546 30471 - Ala CGC [ENA] ¢þ
>WENV170600497 FUWD010129740 [FUWD] metagenome; unknown 134 209 + Ala CGC [ENA] ¢þ
>WENV170606107 FUWD010610037 [FUWD] metagenome; unknown 153 228 + Ala CGC [ENA] ¢þ
>WENV170625726 FUWD013204239 [FUWD] metagenome; unknown 1715 1790 + Ala CGC [ENA] ¢þ
>WENV170626727 FUWD013229117 [FUWD] metagenome; unknown 13457 13382 - Ala CGC [ENA] ¢þ
>WENV170629410 FUWD013269716 [FUWD] metagenome; unknown 16497 16422 - Ala CGC [ENA] ¢þ
>WENV170633722 FUWD013401083 [FUWD] metagenome; unknown 26181 26106 - Ala CGC [ENA] ¢þ
>SRA1024028 SRR035084.233560 454 Sequencing (SRP001805) 480 405 - Ala CGC [SRA]
>SRA1024055 SRR035084.238269 454 Sequencing (SRP001805) 202 277 + Ala CGC [SRA]
>SRA1052014 SRR035098.123907 454 Sequencing (SRP001819) 135 60 - Ala CGC [SRA]
>SRA1052049 SRR035098.130812 454 Sequencing (SRP001819) 362 287 - Ala CGC [SRA]
>SRA1052396 SRR035098.195153 454 Sequencing (SRP001819) 122 197 + Ala CGC [SRA]
>SRA1052802 SRR035098.278327 454 Sequencing (SRP001819) 362 287 - Ala CGC [SRA]
>SRA1053298 SRR035098.377159 454 Sequencing (SRP001819) 232 157 - Ala CGC [SRA]
>W1610625665 LIAY01000008 Actinomycetota Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY] 17815 17890 + Ala CGC [ENA] ¡û
>W1710756792 LIAY01000008 Actinomycetota Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY] 17815 17890 + Ala CGC [ENA] ¡û
Identical group No.343246 (28 seq.)
>W1710874089 LMNH01000006 Actinomycetota Nocardioides sp. Leaf285 [LMNH] 24559 24634 + Ala CGC [ENA] ¡û
>W1710874874 LMNY01000002 Actinomycetota Nocardioides sp. Leaf307 [LMNY] 1190464 1190389 - Ala CGC [ENA] ¡û
>W131155919 AQOZ01000019 Actinomycetota Nocardioides sp. Iso805N [AQOZ] 130903 130978 + Ala CGC [ENA] ¡û
>WENV180098586 MTBK01255882 [MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge 206 281 + Ala CGC [ENA] ¢þ
>WENV181309633 OFIW01017677 [OFIW] marine metagenome; seawater 286 359 + Ala CGC [ENA] ¢þ
>W141243081 CAJC01000209 Actinomycetota Tetrasphaera jenkinsii Ben 74 [CAJC] 1657 1730 + Ala CGC [ENA] ¡û
>W141277553 JAER01000024 Actinomycetota Nocardioides sp. J54 [JAER] 25003 25080 + Ala CGC [ENA] ¡û
>WENV170950521 MEHZ011501554 [MEHZ] marine metagenome; marine surface water 150 223 + Ala CGC [ENA] ¢þ
>C191186692 CP041091 Actinomycetota Nocardioides sambongensis KUDC 5002 [CP041091] 4133674 4133749 + Ala CGC - ¡û
>W141815865 JQJL01000015 Actinomycetota Nocardioides sp. UNC345MFTsu5.1 [JQJL] 321806 321881 + Ala CGC [ENA] ¡û
>W1910181516 BJMC01000003 Actinomycetota Pimelobacter simplex NBRC 12069 [BJMC] 39598 39525 - Ala CGC [ENA] ¡û
>W1911495838 OBQK01000002 Actinomycetota Ornithinimicrobium cerasi USBA17B2 [OBQK] 353017 352942 - Ala CGC [ENA] ¡û
>W1911533118 OKQN01000007 Actinomycetota Janibacter massiliensis Marseille-P4121 [OKQN] 282832 282906 + Ala CGC [ENA] ¡û
>W1810364573 PVTI01000027 Actinomycetota Knoellia remsis ATCC BAA-1496 [PVTI] 46856 46930 + Ala CGC [ENA] ¡û
>W1810504004 QBKO01000012 Actinomycetota Nocardioides sp. CF167 [QBKO] 28271 28196 - Ala CGC [ENA] ¡û
>C151061326 CP009896 Actinomycetota Pimelobacter simplex VKM Ac-2033D [CP009896] 1028743 1028818 + Ala CGC [Ensembl] ¡û
>SRA1023718 SRR035084.160050 454 Sequencing (SRP001805) 110 37 - Ala CGC [SRA]
>SRA1024268 SRR035084.288110 454 Sequencing (SRP001805) 84 159 + Ala CGC [SRA]
>SRA1024280 SRR035084.291525 454 Sequencing (SRP001805) 306 233 - Ala CGC [SRA]
>W11155969 AFAQ01001944 Actinomycetota Rhodococcus sp. R04 [AFAQ] 378 453 + Ala CGC [ENA] ¡û
>W1610027179 AVPK01000010 Actinomycetota Knoellia subterranea KCTC 19937 [AVPK] 82548 82473 - Ala CGC [ENA] ¡û
>W1610049457 BBEZ01000010 Actinomycetota Nocardioides sp. AN3 [BBEZ] 17946 17871 - Ala CGC [ENA] ¡û
>W1610736435 LMNH01000006 Actinomycetota Nocardioides sp. Leaf285 [LMNH] 24559 24634 + Ala CGC [ENA] ¡û
>W1610737220 LMNY01000002 Actinomycetota Nocardioides sp. Leaf307 [LMNY] 1190464 1190389 - Ala CGC [ENA] ¡û
>W1710023344 AVPK01000010 Actinomycetota Knoellia subterranea KCTC 19937 [AVPK] 82548 82473 - Ala CGC [ENA] ¡û
>W1710045856 BBEZ01000010 Actinomycetota Nocardioides sp. AN3 [BBEZ] 17946 17871 - Ala CGC [ENA] ¡û
>W1710515948 FNCF01000001 Actinomycetota Klenkia brasiliensis [FNCF] 223466 223391 - Ala CGC [ENA] ¡û
>W1710524364 FNIR01000005 Actinomycetota Klenkia soli [FNIR] 171030 170955 - Ala CGC [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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