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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326837 (22 seq.)
>WENV180360620
OBNU01004874
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
883
810
-
Ala
CGC
[ENA]
¢þ
>WENV180361961
OBNW01014311
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
226
153
-
Ala
CGC
[ENA]
¢þ
>WENV180394464
OBPS01007268
[OBPS] marine metagenome; ENVO:00002010 seawater
950
1023
+
Ala
CGC
[ENA]
¢þ
>WENV180395263
OBPT01005577
[OBPT] marine metagenome; ENVO:00002010 seawater
443
516
+
Ala
CGC
[ENA]
¢þ
>WENV181325993
OFLJ01063506
[OFLJ] seawater metagenome; seawater
360
287
-
Ala
CGC
[ENA]
¢þ
>WENV170569853
FLMP01327579
[FLMP] seawater metagenome; seawater
360
285
-
Ala
CGC
[ENA]
¢þ
>WENV170571390
FLOH01000146
[FLOH] marine metagenome; water
30546
30471
-
Ala
CGC
[ENA]
¢þ
>WENV170600497
FUWD010129740
[FUWD] metagenome; unknown
134
209
+
Ala
CGC
[ENA]
¢þ
>WENV170606107
FUWD010610037
[FUWD] metagenome; unknown
153
228
+
Ala
CGC
[ENA]
¢þ
>WENV170625726
FUWD013204239
[FUWD] metagenome; unknown
1715
1790
+
Ala
CGC
[ENA]
¢þ
>WENV170626727
FUWD013229117
[FUWD] metagenome; unknown
13457
13382
-
Ala
CGC
[ENA]
¢þ
>WENV170629410
FUWD013269716
[FUWD] metagenome; unknown
16497
16422
-
Ala
CGC
[ENA]
¢þ
>WENV170633722
FUWD013401083
[FUWD] metagenome; unknown
26181
26106
-
Ala
CGC
[ENA]
¢þ
>SRA1024028
SRR035084.233560
454 Sequencing (SRP001805)
480
405
-
Ala
CGC
[SRA]
>SRA1024055
SRR035084.238269
454 Sequencing (SRP001805)
202
277
+
Ala
CGC
[SRA]
>SRA1052014
SRR035098.123907
454 Sequencing (SRP001819)
135
60
-
Ala
CGC
[SRA]
>SRA1052049
SRR035098.130812
454 Sequencing (SRP001819)
362
287
-
Ala
CGC
[SRA]
>SRA1052396
SRR035098.195153
454 Sequencing (SRP001819)
122
197
+
Ala
CGC
[SRA]
>SRA1052802
SRR035098.278327
454 Sequencing (SRP001819)
362
287
-
Ala
CGC
[SRA]
>SRA1053298
SRR035098.377159
454 Sequencing (SRP001819)
232
157
-
Ala
CGC
[SRA]
>W1610625665
LIAY01000008
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
17815
17890
+
Ala
CGC
[ENA]
¡û
>W1710756792
LIAY01000008
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
17815
17890
+
Ala
CGC
[ENA]
¡û
Identical group No.343246 (28 seq.)
>W1710874089
LMNH01000006
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
24559
24634
+
Ala
CGC
[ENA]
¡û
>W1710874874
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1190464
1190389
-
Ala
CGC
[ENA]
¡û
>W131155919
AQOZ01000019
Actinomycetota
Nocardioides sp. Iso805N [AQOZ]
130903
130978
+
Ala
CGC
[ENA]
¡û
>WENV180098586
MTBK01255882
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
206
281
+
Ala
CGC
[ENA]
¢þ
>WENV181309633
OFIW01017677
[OFIW] marine metagenome; seawater
286
359
+
Ala
CGC
[ENA]
¢þ
>W141243081
CAJC01000209
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
1657
1730
+
Ala
CGC
[ENA]
¡û
>W141277553
JAER01000024
Actinomycetota
Nocardioides sp. J54 [JAER]
25003
25080
+
Ala
CGC
[ENA]
¡û
>WENV170950521
MEHZ011501554
[MEHZ] marine metagenome; marine surface water
150
223
+
Ala
CGC
[ENA]
¢þ
>C191186692
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
4133674
4133749
+
Ala
CGC
-
¡û
>W141815865
JQJL01000015
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
321806
321881
+
Ala
CGC
[ENA]
¡û
>W1910181516
BJMC01000003
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
39598
39525
-
Ala
CGC
[ENA]
¡û
>W1911495838
OBQK01000002
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
353017
352942
-
Ala
CGC
[ENA]
¡û
>W1911533118
OKQN01000007
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
282832
282906
+
Ala
CGC
[ENA]
¡û
>W1810364573
PVTI01000027
Actinomycetota
Knoellia remsis ATCC BAA-1496 [PVTI]
46856
46930
+
Ala
CGC
[ENA]
¡û
>W1810504004
QBKO01000012
Actinomycetota
Nocardioides sp. CF167 [QBKO]
28271
28196
-
Ala
CGC
[ENA]
¡û
>C151061326
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
1028743
1028818
+
Ala
CGC
[Ensembl]
¡û
>SRA1023718
SRR035084.160050
454 Sequencing (SRP001805)
110
37
-
Ala
CGC
[SRA]
>SRA1024268
SRR035084.288110
454 Sequencing (SRP001805)
84
159
+
Ala
CGC
[SRA]
>SRA1024280
SRR035084.291525
454 Sequencing (SRP001805)
306
233
-
Ala
CGC
[SRA]
>W11155969
AFAQ01001944
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
378
453
+
Ala
CGC
[ENA]
¡û
>W1610027179
AVPK01000010
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
82548
82473
-
Ala
CGC
[ENA]
¡û
>W1610049457
BBEZ01000010
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
17946
17871
-
Ala
CGC
[ENA]
¡û
>W1610736435
LMNH01000006
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
24559
24634
+
Ala
CGC
[ENA]
¡û
>W1610737220
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1190464
1190389
-
Ala
CGC
[ENA]
¡û
>W1710023344
AVPK01000010
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
82548
82473
-
Ala
CGC
[ENA]
¡û
>W1710045856
BBEZ01000010
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
17946
17871
-
Ala
CGC
[ENA]
¡û
>W1710515948
FNCF01000001
Actinomycetota
Klenkia brasiliensis [FNCF]
223466
223391
-
Ala
CGC
[ENA]
¡û
>W1710524364
FNIR01000005
Actinomycetota
Klenkia soli [FNIR]
171030
170955
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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