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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CTA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.573358 (1 seq.)
>SRA1023150
SRR035084.20422
454 Sequencing (SRP001805)
43
118
+
Sup
CTA
[SRA]
Identical group No.573393 (1 seq.)
>SRA1023884
SRR035084.199436
454 Sequencing (SRP001805)
196
122
-
Sup
CTA
[SRA]
Identical group No.711480 (4 seq.)
>WENV170623660
FUWD013163858
[FUWD] metagenome; unknown
248
322
+
Sup
CTA
[ENA]
¢þ
>WENV170631935
FUWD013372621
[FUWD] metagenome; unknown
248
322
+
Sup
CTA
[ENA]
¢þ
>SRA1023728
SRR035084.161903
454 Sequencing (SRP001805)
113
187
+
Sup
CTA
[SRA]
>SRA1024821
SRR035084.413187
454 Sequencing (SRP001805)
195
121
-
Sup
CTA
[SRA]
Identical group No.726894 (1 seq.)
>SRA1023750
SRR035084.164862
454 Sequencing (SRP001805)
145
216
+
Sup
CTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK