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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61429 (1 seq.)
>SRA1024364
SRR035084.308442
454 Sequencing (SRP001805)
180
269
+
Glu
CTC
[SRA]
Identical group No.726869 (1 seq.)
>SRA1023200
SRR035084.35938
454 Sequencing (SRP001805)
117
188
+
Glu
CTC
[SRA]
Identical group No.726889 (1 seq.)
>SRA1023587
SRR035084.131405
454 Sequencing (SRP001805)
143
217
+
Glu
CTC
[SRA]
Identical group No.726929 (1 seq.)
>SRA1025157
SRR035084.501452
454 Sequencing (SRP001805)
314
240
-
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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