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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CTG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.573715 (1 seq.)
>SRA1023343
SRR035084.74809
454 Sequencing (SRP001805)
226
302
+
Gln
CTG
[SRA]
Identical group No.726875 (1 seq.)
>SRA1023376
SRR035084.83125
454 Sequencing (SRP001805)
469
395
-
Gln
CTG
[SRA]
Identical group No.726902 (1 seq.)
>SRA1024053
SRR035084.237947
454 Sequencing (SRP001805)
116
191
+
Gln
CTG
[SRA]
Identical group No.726910 (1 seq.)
>SRA1024481
SRR035084.334623
454 Sequencing (SRP001805)
168
243
+
Gln
CTG
[SRA]
Identical group No.726917 (1 seq.)
>SRA1024795
SRR035084.403765
454 Sequencing (SRP001805)
350
276
-
Gln
CTG
[SRA]
Identical group No.726920 (1 seq.)
>SRA1024900
SRR035084.432658
454 Sequencing (SRP001805)
517
442
-
Gln
CTG
[SRA]
Identical group No.726926 (1 seq.)
>SRA1025099
SRR035084.484263
454 Sequencing (SRP001805)
294
220
-
Gln
CTG
[SRA]
Identical group No.726928 (1 seq.)
>SRA1025128
SRR035084.491931
454 Sequencing (SRP001805)
418
489
+
Gln
CTG
[SRA]
Identical group No.727187 (1 seq.)
>SRA1024359
SRR035084.307274
454 Sequencing (SRP001805)
49
123
+
Gln
CTG
[SRA]
Identical group No.812671 (1 seq.)
>SRA1025077
SRR035084.478422
454 Sequencing (SRP001805)
93
22
-
Gln
CTG
[SRA]
Identical group No.812815 (1 seq.)
>SRA1023485
SRR035084.108841
454 Sequencing (SRP001805)
158
87
-
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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