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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CTT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381127 (1 seq.)
>SRA1024671
SRR035084.373179
454 Sequencing (SRP001805)
204
130
-
Lys
CTT
[SRA]
Identical group No.573363 (1 seq.)
>SRA1023239
SRR035084.48761
454 Sequencing (SRP001805)
156
231
+
Lys
CTT
[SRA]
Identical group No.573367 (1 seq.)
>SRA1023302
SRR035084.67772
454 Sequencing (SRP001805)
381
456
+
Lys
CTT
[SRA]
Identical group No.573423 (1 seq.)
>SRA1024786
SRR035084.400678
454 Sequencing (SRP001805)
411
336
-
Lys
CTT
[SRA]
Identical group No.573426 (1 seq.)
>SRA1024838
SRR035084.416172
454 Sequencing (SRP001805)
136
60
-
Lys
CTT
[SRA]
Identical group No.726925 (1 seq.)
>SRA1025071
SRR035084.476004
454 Sequencing (SRP001805)
121
195
+
Lys
CTT
[SRA]
Identical group No.726935 (1 seq.)
>SRA1025326
SRR035084.553477
454 Sequencing (SRP001805)
184
256
+
Lys
CTT
[SRA]
Identical group No.812649 (1 seq.)
>SRA1023368
SRR035084.80190
454 Sequencing (SRP001805)
367
294
-
Lys
CTT
[SRA]
Identical group No.812667 (1 seq.)
>SRA1024866
SRR035084.424392
454 Sequencing (SRP001805)
323
252
-
Lys
CTT
[SRA]
Identical group No.812669 (1 seq.)
>SRA1024959
SRR035084.447463
454 Sequencing (SRP001805)
263
192
-
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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