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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GAA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258000 (1 seq.)
>SRA1025400
SRR035084.581216
454 Sequencing (SRP001805)
335
412
+
Phe
GAA
[SRA]
Identical group No.381074 (1 seq.)
>SRA1023144
SRR035084.18658
454 Sequencing (SRP001805)
161
234
+
Phe
GAA
[SRA]
Identical group No.381146 (1 seq.)
>SRA1025149
SRR035084.498865
454 Sequencing (SRP001805)
157
81
-
Phe
GAA
[SRA]
Identical group No.573361 (1 seq.)
>SRA1023206
SRR035084.37385
454 Sequencing (SRP001805)
382
455
+
Phe
GAA
[SRA]
Identical group No.573380 (1 seq.)
>SRA1023564
SRR035084.124303
454 Sequencing (SRP001805)
61
133
+
Phe
GAA
[SRA]
Identical group No.573445 (1 seq.)
>SRA1025226
SRR035084.521392
454 Sequencing (SRP001805)
95
168
+
Phe
GAA
[SRA]
Identical group No.573446 (1 seq.)
>SRA1025262
SRR035084.533277
454 Sequencing (SRP001805)
118
193
+
Phe
GAA
[SRA]
Identical group No.573714 (1 seq.)
>SRA1023176
SRR035084.27349
454 Sequencing (SRP001805)
252
327
+
Phe
GAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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