This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81144 (1 seq.)
>SRA1025062
SRR035084.474621
454 Sequencing (SRP001805)
370
456
+
Leu
GAG
[SRA]
Identical group No.101947 (1 seq.)
>SRA1024545
SRR035084.346625
454 Sequencing (SRP001805)
501
416
-
Leu
GAG
[SRA]
Identical group No.101949 (1 seq.)
>SRA1024857
SRR035084.422473
454 Sequencing (SRP001805)
254
167
-
Leu
GAG
[SRA]
Identical group No.101982 (1 seq.)
>SRA1023786
SRR035084.175056
454 Sequencing (SRP001805)
37
122
+
Leu
GAG
[SRA]
Identical group No.169142 (1 seq.)
>SRA1023320
SRR035084.71843
454 Sequencing (SRP001805)
302
387
+
Leu
GAG
[SRA]
Identical group No.169144 (1 seq.)
>SRA1023600
SRR035084.135437
454 Sequencing (SRP001805)
201
286
+
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK