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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GAG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81144 (1 seq.)
>SRA1025062
SRR035084.474621
454 Sequencing (SRP001805)
370
456
+
Leu
GAG
[SRA]
Identical group No.101947 (1 seq.)
>SRA1024545
SRR035084.346625
454 Sequencing (SRP001805)
501
416
-
Leu
GAG
[SRA]
Identical group No.101949 (1 seq.)
>SRA1024857
SRR035084.422473
454 Sequencing (SRP001805)
254
167
-
Leu
GAG
[SRA]
Identical group No.101982 (1 seq.)
>SRA1023786
SRR035084.175056
454 Sequencing (SRP001805)
37
122
+
Leu
GAG
[SRA]
Identical group No.118409 (6 seq.)
>WENV170627345
FUWD013232623
[FUWD] metagenome; unknown
79840
79754
-
Leu
GAG
[ENA]
¢þ
>SRA1024561
SRR035084.348448
454 Sequencing (SRP001805)
279
365
+
Leu
GAG
[SRA]
>SRA1024661
SRR035084.371454
454 Sequencing (SRP001805)
279
365
+
Leu
GAG
[SRA]
>SRA1025160
SRR035084.502676
454 Sequencing (SRP001805)
241
155
-
Leu
GAG
[SRA]
>SRA1046913
SRR035093.417481
454 Sequencing (SRP001814)
47
133
+
Leu
GAG
[SRA]
>SRA1047362
SRR035093.522896
454 Sequencing (SRP001814)
448
362
-
Leu
GAG
[SRA]
Identical group No.131785 (3 seq.)
>WENV170621497
FUWD013061226
[FUWD] metagenome; unknown
2685
2769
+
Leu
GAG
[ENA]
¢þ
>WENV170629551
FUWD013273187
[FUWD] metagenome; unknown
16762
16846
+
Leu
GAG
[ENA]
¢þ
>SRA1025277
SRR035084.536398
454 Sequencing (SRP001805)
251
167
-
Leu
GAG
[SRA]
Identical group No.131849 (4 seq.)
>WENV170627259
FUWD013232437
[FUWD] metagenome; unknown
16945
17031
+
Leu
GAG
[ENA]
¢þ
>SRA1024324
SRR035084.298433
454 Sequencing (SRP001805)
367
281
-
Leu
GAG
[SRA]
>SRA1024528
SRR035084.343221
454 Sequencing (SRP001805)
255
341
+
Leu
GAG
[SRA]
>SRA1024848
SRR035084.420188
454 Sequencing (SRP001805)
49
135
+
Leu
GAG
[SRA]
Identical group No.156287 (71 seq.)
>WENV181306775
OFIM01010199
[OFIM] marine metagenome; seawater
299
384
+
Leu
GAG
[ENA]
¢þ
>WENV181315557
OFJP01004677
[OFJP] marine metagenome; seawater
387
302
-
Leu
GAG
[ENA]
¢þ
>WENV181324973
OFLI01000785
[OFLI] seawater metagenome; seawater
1349
1434
+
Leu
GAG
[ENA]
¢þ
>WENV181385659
OFRJ01004223
[OFRJ] marine metagenome; seawater
534
449
-
Leu
GAG
[ENA]
¢þ
>WENV182540308
OJAH01000880
[OJAH] seawater metagenome; Sea water
1404
1489
+
Leu
GAG
[ENA]
¢þ
>WENV182540439
OJAJ01001224
[OJAJ] seawater metagenome; Sea water
828
743
-
Leu
GAG
[ENA]
¢þ
>WENV182540925
OJAQ01000446
[OJAQ] seawater metagenome; Sea water
4105
4020
-
Leu
GAG
[ENA]
¢þ
>WENV182542101
OJAV01002868
[OJAV] seawater metagenome; Sea water
1985
1900
-
Leu
GAG
[ENA]
¢þ
>WENV182543552
OJBB01003681
[OJBB] seawater metagenome; Sea water
211
296
+
Leu
GAG
[ENA]
¢þ
>WENV182544259
OJBF01000554
[OJBF] seawater metagenome; Sea water
1432
1347
-
Leu
GAG
[ENA]
¢þ
>WENV182544446
OJBG01001939
[OJBG] seawater metagenome; Sea water
405
490
+
Leu
GAG
[ENA]
¢þ
>WENV182544927
OJBL01000182
[OJBL] seawater metagenome; Sea water
2467
2382
-
Leu
GAG
[ENA]
¢þ
>WENV182545239
OJBN01000170
[OJBN] seawater metagenome; Sea water
16445
16530
+
Leu
GAG
[ENA]
¢þ
>WENV182548605
OJBW01006147
[OJBW] seawater metagenome; Sea water
500
585
+
Leu
GAG
[ENA]
¢þ
>WENV182550096
OJBZ01003015
[OJBZ] seawater metagenome; Sea water
3069
3154
+
Leu
GAG
[ENA]
¢þ
>WENV182551810
OJCJ01000078
[OJCJ] seawater metagenome; Sea water
16642
16727
+
Leu
GAG
[ENA]
¢þ
>WENV182552566
OJCL01000581
[OJCL] seawater metagenome; Sea water
409
494
+
Leu
GAG
[ENA]
¢þ
>WENV182553578
OJCR01012691
[OJCR] seawater metagenome; Sea water
460
375
-
Leu
GAG
[ENA]
¢þ
>WENV182554150
OJCT01003946
[OJCT] seawater metagenome; Sea water
433
348
-
Leu
GAG
[ENA]
¢þ
>WENV182554971
OJCY01000215
[OJCY] seawater metagenome; Sea water
11029
11114
+
Leu
GAG
[ENA]
¢þ
>WENV182556284
OJDG01003165
[OJDG] seawater metagenome; Sea water
1803
1718
-
Leu
GAG
[ENA]
¢þ
>WENV182557253
OJDI01003457
[OJDI] seawater metagenome; Sea water
126
211
+
Leu
GAG
[ENA]
¢þ
>WENV182558364
OJDM01000543
[OJDM] seawater metagenome; Sea water
4116
4031
-
Leu
GAG
[ENA]
¢þ
>WENV182561661
OJDX01000394
[OJDX] seawater metagenome; Sea water
1523
1438
-
Leu
GAG
[ENA]
¢þ
>WENV182561941
OJDY01000135
[OJDY] seawater metagenome; Sea water
3907
3822
-
Leu
GAG
[ENA]
¢þ
>WENV182562406
OJDZ01002285
[OJDZ] seawater metagenome; Sea water
1513
1428
-
Leu
GAG
[ENA]
¢þ
>WENV182562799
OJEA01002460
[OJEA] seawater metagenome; Sea water
454
369
-
Leu
GAG
[ENA]
¢þ
>WENV182563221
OJEB01002396
[OJEB] seawater metagenome; Sea water
1232
1147
-
Leu
GAG
[ENA]
¢þ
>WENV182564103
OJEE01000144
[OJEE] seawater metagenome; Sea water
3429
3344
-
Leu
GAG
[ENA]
¢þ
>WENV182569151
OJEY01001079
[OJEY] seawater metagenome; Sea water
2452
2537
+
Leu
GAG
[ENA]
¢þ
>WENV182569981
OJFB01003236
[OJFB] seawater metagenome; Sea water
1291
1206
-
Leu
GAG
[ENA]
¢þ
>WENV182572308
OJFL01002990
[OJFL] seawater metagenome; Sea water
1590
1505
-
Leu
GAG
[ENA]
¢þ
>WENV182573463
OJFP01002148
[OJFP] seawater metagenome; Sea water
5937
5852
-
Leu
GAG
[ENA]
¢þ
>WENV182574870
OJFS01004404
[OJFS] seawater metagenome; Sea water
722
807
+
Leu
GAG
[ENA]
¢þ
>WENV182575415
OJFU01016217
[OJFU] seawater metagenome; Sea water
621
536
-
Leu
GAG
[ENA]
¢þ
>WENV182575749
OJFW01000503
[OJFW] seawater metagenome; Sea water
1659
1744
+
Leu
GAG
[ENA]
¢þ
>WENV182576382
OJFX01016435
[OJFX] seawater metagenome; Sea water
126
211
+
Leu
GAG
[ENA]
¢þ
>WENV182576657
OJFY01000799
[OJFY] seawater metagenome; Sea water
3409
3324
-
Leu
GAG
[ENA]
¢þ
>WENV182576916
OJGA01001313
[OJGA] seawater metagenome; Sea water
410
495
+
Leu
GAG
[ENA]
¢þ
>WENV182578017
OJGM01000565
[OJGM] seawater metagenome; Sea water
3868
3783
-
Leu
GAG
[ENA]
¢þ
>WENV182579558
OJGS01022922
[OJGS] seawater metagenome; Sea water
886
801
-
Leu
GAG
[ENA]
¢þ
>WENV182580847
OJGW01018691
[OJGW] seawater metagenome; Sea water
62
147
+
Leu
GAG
[ENA]
¢þ
>WENV182582231
OJHA01001369
[OJHA] seawater metagenome; Sea water
1381
1466
+
Leu
GAG
[ENA]
¢þ
>WENV182582465
OJHB01000285
[OJHB] seawater metagenome; Sea water
7611
7526
-
Leu
GAG
[ENA]
¢þ
>WENV182582822
OJHC01000513
[OJHC] seawater metagenome; Sea water
2027
2112
+
Leu
GAG
[ENA]
¢þ
>WENV182584609
OJHG01002950
[OJHG] seawater metagenome; Sea water
2625
2710
+
Leu
GAG
[ENA]
¢þ
>WENV182586715
OJHK01003565
[OJHK] seawater metagenome; Sea water
1291
1206
-
Leu
GAG
[ENA]
¢þ
>WENV182587644
OJHN01000845
[OJHN] seawater metagenome; Sea water
1851
1766
-
Leu
GAG
[ENA]
¢þ
>WENV182588404
OJHT01000718
[OJHT] seawater metagenome; Sea water
1088
1003
-
Leu
GAG
[ENA]
¢þ
>WENV182588753
OJHX01000395
[OJHX] seawater metagenome; Sea water
1346
1261
-
Leu
GAG
[ENA]
¢þ
>WENV182592766
OJIR01021941
[OJIR] seawater metagenome; Sea water
611
696
+
Leu
GAG
[ENA]
¢þ
>WENV183053698
OLGP01003362
[OLGP] seawater metagenome; Sea water
332
247
-
Leu
GAG
[ENA]
¢þ
>WENV183054705
OLGU01001421
[OLGU] seawater metagenome; Sea water
3776
3691
-
Leu
GAG
[ENA]
¢þ
>WENV183058960
OLHS01000080
[OLHS] seawater metagenome; Sea water
5704
5789
+
Leu
GAG
[ENA]
¢þ
>WENV183059259
OLHU01000134
[OLHU] seawater metagenome; Sea water
11859
11944
+
Leu
GAG
[ENA]
¢þ
>WENV183060314
OLHX01002177
[OLHX] seawater metagenome; Sea water
988
903
-
Leu
GAG
[ENA]
¢þ
>WENV183618420
OOFO01000791
[OOFO] marine metagenome; seawater
1349
1434
+
Leu
GAG
[ENA]
¢þ
>WENV183621367
OOFT01073474
[OOFT] marine metagenome; sea ice
259
174
-
Leu
GAG
[ENA]
¢þ
>WENV170306727
CESJ01063061
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3218
3133
-
Leu
GAG
[ENA]
¢þ
>WENV170399280
CEUE01005609
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
852
937
+
Leu
GAG
[ENA]
¢þ
>WENV170568296
FLMP01028069
[FLMP] seawater metagenome; seawater
1349
1434
+
Leu
GAG
[ENA]
¢þ
>WENV170627428
FUWD013232762
[FUWD] metagenome; unknown
40652
40567
-
Leu
GAG
[ENA]
¢þ
>WENV170878401
MDTC01075734
[MDTC] marine metagenome; seawater
6337
6252
-
Leu
GAG
[ENA]
¢þ
>WENV170918558
MDTF01001515
[MDTF] marine metagenome; seawater
3028
2943
-
Leu
GAG
[ENA]
¢þ
>WENV170953639
MEHZ011657093
[MEHZ] marine metagenome; marine surface water
675
760
+
Leu
GAG
[ENA]
¢þ
>SRA1023583
SRR035084.130770
454 Sequencing (SRP001805)
484
399
-
Leu
GAG
[SRA]
>SRA1045564
SRR035093.124076
454 Sequencing (SRP001814)
150
235
+
Leu
GAG
[SRA]
>SRA1045953
SRR035093.204725
454 Sequencing (SRP001814)
394
309
-
Leu
GAG
[SRA]
>SRA1046101
SRR035093.237501
454 Sequencing (SRP001814)
377
292
-
Leu
GAG
[SRA]
>C11117113
CP002511
Alphaproteobacteria
Candidatus Pelagibacter sp. IMCC9063 [CP002511]
882772
882857
+
Leu
GAG
[Ensembl]
¡û
>WENV046729
AACY022619313
Marine microbial communities from Global Ocean Sampling (GOS)
344
431
+
Leu
GAG
[ENA]
Identical group No.156511 (22 seq.)
>WENV181313911
OFJH01025422
[OFJH] marine metagenome; seawater
266
183
-
Leu
GAG
[ENA]
¢þ
>WENV181325101
OFLI01006199
[OFLI] seawater metagenome; seawater
316
399
+
Leu
GAG
[ENA]
¢þ
>WENV181391126
OFRQ01041192
[OFRQ] seawater metagenome; seawater
249
332
+
Leu
GAG
[ENA]
¢þ
>WENV183618545
OOFO01006286
[OOFO] marine metagenome; seawater
711
628
-
Leu
GAG
[ENA]
¢þ
>WENV183626227
OOGH01041741
[OOGH] marine metagenome; seawater
249
332
+
Leu
GAG
[ENA]
¢þ
>WENV170567652
FLMP01003022
[FLMP] seawater metagenome; seawater
1296
1211
-
Leu
GAG
[ENA]
¢þ
>WENV170627178
FUWD013231804
[FUWD] metagenome; unknown
15838
15923
+
Leu
GAG
[ENA]
¢þ
>WENV170627179
FUWD013231805
[FUWD] metagenome; unknown
15836
15921
+
Leu
GAG
[ENA]
¢þ
>WENV170632204
FUWD013379390
[FUWD] metagenome; unknown
15838
15923
+
Leu
GAG
[ENA]
¢þ
>WENV170632205
FUWD013379391
[FUWD] metagenome; unknown
15836
15921
+
Leu
GAG
[ENA]
¢þ
>WENV170948888
MEHZ011304172
[MEHZ] marine metagenome; marine surface water
151
236
+
Leu
GAG
[ENA]
¢þ
>SRA1023299
SRR035084.66838
454 Sequencing (SRP001805)
303
388
+
Leu
GAG
[SRA]
>SRA1045458
SRR035093.98414
454 Sequencing (SRP001814)
122
37
-
Leu
GAG
[SRA]
>SRA1046139
SRR035093.243956
454 Sequencing (SRP001814)
134
49
-
Leu
GAG
[SRA]
>SRA1047068
SRR035093.448606
454 Sequencing (SRP001814)
52
137
+
Leu
GAG
[SRA]
>SRA1047182
SRR035093.477570
454 Sequencing (SRP001814)
333
248
-
Leu
GAG
[SRA]
>SRA1047572
SRR035093.583417
454 Sequencing (SRP001814)
104
189
+
Leu
GAG
[SRA]
>SRA1052543
SRR035098.224722
454 Sequencing (SRP001819)
351
436
+
Leu
GAG
[SRA]
>SRA1052834
SRR035098.283059
454 Sequencing (SRP001819)
313
398
+
Leu
GAG
[SRA]
>W121063466
AJKR01000003
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
92730
92813
+
Leu
GAG
[ENA]
¡û
>W1610625725
LIBA01000080
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
4264
4349
+
Leu
GAG
[ENA]
¡û
>W1710756852
LIBA01000080
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
4264
4349
+
Leu
GAG
[ENA]
¡û
Identical group No.165683 (3 seq.)
>WENV170607801
FUWD010857315
[FUWD] metagenome; unknown
560
475
-
Leu
GAG
[ENA]
¢þ
>SRA1023763
SRR035084.169042
454 Sequencing (SRP001805)
84
169
+
Leu
GAG
[SRA]
>SRA1028209
SRR035086.277771
454 Sequencing (SRP001807)
503
418
-
Leu
GAG
[SRA]
Identical group No.165802 (3 seq.)
>WENV170621994
FUWD013082846
[FUWD] metagenome; unknown
781
866
+
Leu
GAG
[ENA]
¢þ
>WENV170630197
FUWD013298135
[FUWD] metagenome; unknown
1587
1502
-
Leu
GAG
[ENA]
¢þ
>SRA1024102
SRR035084.251023
454 Sequencing (SRP001805)
373
458
+
Leu
GAG
[SRA]
Identical group No.165825 (4 seq.)
>WENV170626903
FUWD013230011
[FUWD] metagenome; unknown
3222
3138
-
Leu
GAG
[ENA]
¢þ
>WENV170628490
FUWD013247827
[FUWD] metagenome; unknown
103854
103770
-
Leu
GAG
[ENA]
¢þ
>SRA1023291
SRR035084.65313
454 Sequencing (SRP001805)
364
280
-
Leu
GAG
[SRA]
>SRA1053009
SRR035098.317671
454 Sequencing (SRP001819)
273
189
-
Leu
GAG
[SRA]
Identical group No.169142 (1 seq.)
>SRA1023320
SRR035084.71843
454 Sequencing (SRP001805)
302
387
+
Leu
GAG
[SRA]
Identical group No.169144 (1 seq.)
>SRA1023600
SRR035084.135437
454 Sequencing (SRP001805)
201
286
+
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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