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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GAT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257977 (1 seq.)
>SRA1023799
SRR035084.178292
454 Sequencing (SRP001805)
360
283
-
Ile
GAT
[SRA]
Identical group No.257993 (1 seq.)
>SRA1025003
SRR035084.456893
454 Sequencing (SRP001805)
280
203
-
Ile
GAT
[SRA]
Identical group No.258001 (1 seq.)
>SRA1025411
SRR035084.584800
454 Sequencing (SRP001805)
373
296
-
Ile
GAT
[SRA]
Identical group No.381106 (1 seq.)
>SRA1024135
SRR035084.258051
454 Sequencing (SRP001805)
130
206
+
Ile
GAT
[SRA]
Identical group No.381132 (1 seq.)
>SRA1024785
SRR035084.400429
454 Sequencing (SRP001805)
349
422
+
Ile
GAT
[SRA]
Identical group No.381151 (1 seq.)
>SRA1025269
SRR035084.534829
454 Sequencing (SRP001805)
80
156
+
Ile
GAT
[SRA]
Identical group No.381152 (1 seq.)
>SRA1025293
SRR035084.543800
454 Sequencing (SRP001805)
264
189
-
Ile
GAT
[SRA]
Identical group No.573383 (1 seq.)
>SRA1023592
SRR035084.133148
454 Sequencing (SRP001805)
438
513
+
Ile
GAT
[SRA]
Identical group No.573408 (1 seq.)
>SRA1024508
SRR035084.340001
454 Sequencing (SRP001805)
410
483
+
Ile
GAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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