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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GCC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381077 (1 seq.)
>SRA1023202
SRR035084.36641
454 Sequencing (SRP001805)
357
281
-
Gly
GCC
[SRA]
Identical group No.381119 (1 seq.)
>SRA1024402
SRR035084.316733
454 Sequencing (SRP001805)
302
378
+
Gly
GCC
[SRA]
Identical group No.381124 (1 seq.)
>SRA1024584
SRR035084.354543
454 Sequencing (SRP001805)
258
182
-
Gly
GCC
[SRA]
Identical group No.381131 (1 seq.)
>SRA1024780
SRR035084.399532
454 Sequencing (SRP001805)
317
241
-
Gly
GCC
[SRA]
Identical group No.573424 (1 seq.)
>SRA1024825
SRR035084.413748
454 Sequencing (SRP001805)
192
267
+
Gly
GCC
[SRA]
Identical group No.726916 (1 seq.)
>SRA1024770
SRR035084.397136
454 Sequencing (SRP001805)
303
231
-
Gly
GCC
[SRA]
Identical group No.726919 (1 seq.)
>SRA1024852
SRR035084.420637
454 Sequencing (SRP001805)
145
74
-
Gly
GCC
[SRA]
Identical group No.812657 (1 seq.)
>SRA1024121
SRR035084.255008
454 Sequencing (SRP001805)
299
228
-
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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