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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GCT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4751 (1 seq.)
>SRA1025335
SRR035084.555837
454 Sequencing (SRP001805)
253
158
-
Ser
GCT
[SRA]
Identical group No.25973 (1 seq.)
>SRA1023795
SRR035084.177875
454 Sequencing (SRP001805)
53
144
+
Ser
GCT
[SRA]
Identical group No.39788 (1 seq.)
>SRA1023816
SRR035084.183191
454 Sequencing (SRP001805)
124
214
+
Ser
GCT
[SRA]
Identical group No.39796 (1 seq.)
>SRA1023543
SRR035084.119368
454 Sequencing (SRP001805)
50
139
+
Ser
GCT
[SRA]
Identical group No.61383 (1 seq.)
>SRA1023921
SRR035084.207919
454 Sequencing (SRP001805)
414
325
-
Ser
GCT
[SRA]
Identical group No.61387 (2 seq.)
>SRA1024889
SRR035084.429623
454 Sequencing (SRP001805)
4
93
+
Ser
GCT
[SRA]
>SRA1025183
SRR035084.509995
454 Sequencing (SRP001805)
146
235
+
Ser
GCT
[SRA]
Identical group No.81147 (1 seq.)
>SRA1025320
SRR035084.551585
454 Sequencing (SRP001805)
177
89
-
Ser
GCT
[SRA]
Identical group No.81148 (1 seq.)
>SRA1025396
SRR035084.579990
454 Sequencing (SRP001805)
251
163
-
Ser
GCT
[SRA]
Identical group No.101943 (1 seq.)
>SRA1023397
SRR035084.89525
454 Sequencing (SRP001805)
99
12
-
Ser
GCT
[SRA]
Identical group No.101944 (2 seq.)
>SRA1023408
SRR035084.92529
454 Sequencing (SRP001805)
327
240
-
Ser
GCT
[SRA]
>SRA1023611
SRR035084.136581
454 Sequencing (SRP001805)
327
240
-
Ser
GCT
[SRA]
Identical group No.101946 (1 seq.)
>SRA1024382
SRR035084.313558
454 Sequencing (SRP001805)
302
215
-
Ser
GCT
[SRA]
Identical group No.101948 (1 seq.)
>SRA1024749
SRR035084.393227
454 Sequencing (SRP001805)
81
166
+
Ser
GCT
[SRA]
Identical group No.101950 (1 seq.)
>SRA1024890
SRR035084.429938
454 Sequencing (SRP001805)
71
158
+
Ser
GCT
[SRA]
Identical group No.169151 (1 seq.)
>SRA1024722
SRR035084.386118
454 Sequencing (SRP001805)
233
148
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK