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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.39787 (1 seq.)
>SRA1023178
SRR035084.28345
454 Sequencing (SRP001805)
90
180
+
Ser
GGA
[SRA]
Identical group No.39789 (1 seq.)
>SRA1025426
SRR035084.587868
454 Sequencing (SRP001805)
205
295
+
Ser
GGA
[SRA]
Identical group No.61382 (1 seq.)
>SRA1023888
SRR035084.200000
454 Sequencing (SRP001805)
424
335
-
Ser
GGA
[SRA]
Identical group No.61388 (1 seq.)
>SRA1025286
SRR035084.540904
454 Sequencing (SRP001805)
62
149
+
Ser
GGA
[SRA]
Identical group No.136907 (1 seq.)
>SRA1023311
SRR035084.70644
454 Sequencing (SRP001805)
166
252
+
Ser
GGA
[SRA]
Identical group No.136908 (1 seq.)
>SRA1023867
SRR035084.194427
454 Sequencing (SRP001805)
281
367
+
Ser
GGA
[SRA]
Identical group No.136914 (1 seq.)
>SRA1024936
SRR035084.441746
454 Sequencing (SRP001805)
154
239
+
Ser
GGA
[SRA]
Identical group No.136915 (1 seq.)
>SRA1024994
SRR035084.454989
454 Sequencing (SRP001805)
474
388
-
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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