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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GGT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.573362 (1 seq.)
>SRA1023235
SRR035084.45735
454 Sequencing (SRP001805)
360
285
-
Thr
GGT
[SRA]
Identical group No.573422 (1 seq.)
>SRA1024781
SRR035084.399532
454 Sequencing (SRP001805)
230
155
-
Thr
GGT
[SRA]
Identical group No.573434 (1 seq.)
>SRA1025041
SRR035084.466233
454 Sequencing (SRP001805)
249
321
+
Thr
GGT
[SRA]
Identical group No.573717 (1 seq.)
>SRA1024715
SRR035084.383571
454 Sequencing (SRP001805)
109
182
+
Thr
GGT
[SRA]
Identical group No.812654 (1 seq.)
>SRA1023705
SRR035084.156047
454 Sequencing (SRP001805)
228
301
+
Thr
GGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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