This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GTA
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.136905 (1 seq.)
>SRA1023138
SRR035084.15410
454 Sequencing (SRP001805)
419
333
-
Tyr
GTA
[SRA]
Identical group No.169149 (1 seq.)
>SRA1024501
SRR035084.338995
454 Sequencing (SRP001805)
15
100
+
Tyr
GTA
[SRA]
Identical group No.202981 (1 seq.)
>SRA1023534
SRR035084.118085
454 Sequencing (SRP001805)
314
231
-
Tyr
GTA
[SRA]
Identical group No.224210 (1 seq.)
>SRA1024007
SRR035084.227376
454 Sequencing (SRP001805)
251
334
+
Tyr
GTA
[SRA]
Identical group No.224228 (1 seq.)
>SRA1025105
SRR035084.485141
454 Sequencing (SRP001805)
297
378
+
Tyr
GTA
[SRA]
Identical group No.224229 (1 seq.)
>SRA1025119
SRR035084.490009
454 Sequencing (SRP001805)
165
247
+
Tyr
GTA
[SRA]
Identical group No.230985 (1 seq.)
>SRA1024633
SRR035084.365273
454 Sequencing (SRP001805)
104
186
+
Tyr
GTA
[SRA]
Identical group No.238060 (1 seq.)
>SRA1023541
SRR035084.119020
454 Sequencing (SRP001805)
76
152
+
Tyr
GTA
[SRA]
Identical group No.381129 (1 seq.)
>SRA1024731
SRR035084.388977
454 Sequencing (SRP001805)
236
310
+
Tyr
GTA
[SRA]
Identical group No.381141 (1 seq.)
>SRA1025000
SRR035084.456522
454 Sequencing (SRP001805)
79
153
+
Tyr
GTA
[SRA]
Identical group No.573370 (1 seq.)
>SRA1023366
SRR035084.79307
454 Sequencing (SRP001805)
359
435
+
Tyr
GTA
[SRA]
Identical group No.726927 (1 seq.)
>SRA1025123
SRR035084.490878
454 Sequencing (SRP001805)
307
382
+
Tyr
GTA
[SRA]
Identical group No.726932 (1 seq.)
>SRA1025258
SRR035084.530877
454 Sequencing (SRP001805)
182
254
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK