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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GTC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257990 (1 seq.)
>SRA1024833
SRR035084.415622
454 Sequencing (SRP001805)
475
398
-
Asp
GTC
[SRA]
Identical group No.258002 (1 seq.)
>SRA1025427
SRR035084.588764
454 Sequencing (SRP001805)
84
161
+
Asp
GTC
[SRA]
Identical group No.381086 (1 seq.)
>SRA1023410
SRR035084.92776
454 Sequencing (SRP001805)
119
43
-
Asp
GTC
[SRA]
Identical group No.381088 (1 seq.)
>SRA1023555
SRR035084.121828
454 Sequencing (SRP001805)
417
343
-
Asp
GTC
[SRA]
Identical group No.573436 (1 seq.)
>SRA1025079
SRR035084.479397
454 Sequencing (SRP001805)
20
95
+
Asp
GTC
[SRA]
Identical group No.726878 (1 seq.)
>SRA1023409
SRR035084.92776
454 Sequencing (SRP001805)
198
124
-
Asp
GTC
[SRA]
Identical group No.812819 (1 seq.)
>SRA1024855
SRR035084.422347
454 Sequencing (SRP001805)
156
83
-
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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