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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381078 (1 seq.)
>SRA1023224
SRR035084.42703
454 Sequencing (SRP001805)
13
89
+
His
GTG
[SRA]
Identical group No.381383 (1 seq.)
>SRA1023681
SRR035084.149399
454 Sequencing (SRP001805)
398
474
+
His
GTG
[SRA]
Identical group No.381385 (1 seq.)
>SRA1025312
SRR035084.548463
454 Sequencing (SRP001805)
118
42
-
His
GTG
[SRA]
Identical group No.573387 (1 seq.)
>SRA1023677
SRR035084.149318
454 Sequencing (SRP001805)
2
77
+
His
GTG
[SRA]
Identical group No.573404 (1 seq.)
>SRA1024351
SRR035084.306202
454 Sequencing (SRP001805)
101
175
+
His
GTG
[SRA]
Identical group No.812647 (1 seq.)
>SRA1023274
SRR035084.59944
454 Sequencing (SRP001805)
66
139
+
His
GTG
[SRA]
Identical group No.812650 (1 seq.)
>SRA1023620
SRR035084.138558
454 Sequencing (SRP001805)
244
174
-
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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