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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TAA
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61380 (1 seq.)
>SRA1023175
SRR035084.27349
454 Sequencing (SRP001805)
155
244
+
Leu
TAA
[SRA]
Identical group No.81138 (1 seq.)
>SRA1023209
SRR035084.38278
454 Sequencing (SRP001805)
225
311
+
Leu
TAA
[SRA]
Identical group No.81139 (1 seq.)
>SRA1023330
SRR035084.72357
454 Sequencing (SRP001805)
239
324
+
Leu
TAA
[SRA]
Identical group No.81141 (1 seq.)
>SRA1023479
SRR035084.107362
454 Sequencing (SRP001805)
85
-1
-
Leu
TAA
[SRA]
Identical group No.81142 (1 seq.)
>SRA1023722
SRR035084.160878
454 Sequencing (SRP001805)
152
65
-
Leu
TAA
[SRA]
Identical group No.81165 (1 seq.)
>SRA1025403
SRR035084.582451
454 Sequencing (SRP001805)
299
384
+
Leu
TAA
[SRA]
Identical group No.101983 (1 seq.)
>SRA1024643
SRR035084.366998
454 Sequencing (SRP001805)
412
328
-
Leu
TAA
[SRA]
Identical group No.136909 (1 seq.)
>SRA1023895
SRR035084.201973
454 Sequencing (SRP001805)
174
260
+
Leu
TAA
[SRA]
Identical group No.136910 (1 seq.)
>SRA1024366
SRR035084.308544
454 Sequencing (SRP001805)
388
472
+
Leu
TAA
[SRA]
Identical group No.136919 (1 seq.)
>SRA1025273
SRR035084.535543
454 Sequencing (SRP001805)
67
153
+
Leu
TAA
[SRA]
Identical group No.169147 (1 seq.)
>SRA1024165
SRR035084.263751
454 Sequencing (SRP001805)
91
176
+
Leu
TAA
[SRA]
Identical group No.169152 (1 seq.)
>SRA1025055
SRR035084.471060
454 Sequencing (SRP001805)
142
57
-
Leu
TAA
[SRA]
Identical group No.202979 (1 seq.)
>SRA1023301
SRR035084.67772
454 Sequencing (SRP001805)
108
192
+
Leu
TAA
[SRA]
Identical group No.202983 (1 seq.)
>SRA1024000
SRR035084.226321
454 Sequencing (SRP001805)
262
178
-
Leu
TAA
[SRA]
Identical group No.202988 (1 seq.)
>SRA1024764
SRR035084.396554
454 Sequencing (SRP001805)
414
330
-
Leu
TAA
[SRA]
Identical group No.202992 (1 seq.)
>SRA1025394
SRR035084.578989
454 Sequencing (SRP001805)
195
278
+
Leu
TAA
[SRA]
Identical group No.257988 (1 seq.)
>SRA1024782
SRR035084.399607
454 Sequencing (SRP001805)
463
386
-
Leu
TAA
[SRA]
Identical group No.381390 (1 seq.)
>SRA1023984
SRR035084.221064
454 Sequencing (SRP001805)
308
232
-
Leu
TAA
[SRA]
Identical group No.573716 (2 seq.)
>SRA1023797
SRR035084.178094
454 Sequencing (SRP001805)
159
232
+
Leu
TAA
[SRA]
>SRA1024057
SRR035084.238948
454 Sequencing (SRP001805)
155
228
+
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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