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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TAC
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25975 (1 seq.)
>SRA1024789
SRR035084.401916
454 Sequencing (SRP001805)
108
199
+
Val
TAC
[SRA]
Identical group No.257976 (1 seq.)
>SRA1023612
SRR035084.136702
454 Sequencing (SRP001805)
352
427
+
Val
TAC
[SRA]
Identical group No.257998 (1 seq.)
>SRA1025118
SRR035084.489615
454 Sequencing (SRP001805)
118
41
-
Val
TAC
[SRA]
Identical group No.381091 (1 seq.)
>SRA1023576
SRR035084.128643
454 Sequencing (SRP001805)
433
357
-
Val
TAC
[SRA]
Identical group No.381134 (1 seq.)
>SRA1024847
SRR035084.419952
454 Sequencing (SRP001805)
129
53
-
Val
TAC
[SRA]
Identical group No.573430 (1 seq.)
>SRA1024902
SRR035084.432658
454 Sequencing (SRP001805)
144
70
-
Val
TAC
[SRA]
Identical group No.726887 (1 seq.)
>SRA1023554
SRR035084.121828
454 Sequencing (SRP001805)
515
444
-
Val
TAC
[SRA]
Identical group No.726888 (1 seq.)
>SRA1023575
SRR035084.128606
454 Sequencing (SRP001805)
74
1
-
Val
TAC
[SRA]
Identical group No.812668 (1 seq.)
>SRA1024958
SRR035084.447463
454 Sequencing (SRP001805)
338
265
-
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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