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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TAG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81140 (1 seq.)
>SRA1023331
SRR035084.72357
454 Sequencing (SRP001805)
396
483
+
Leu
TAG
[SRA]
Identical group No.136906 (1 seq.)
>SRA1023240
SRR035084.48761
454 Sequencing (SRP001805)
317
401
+
Leu
TAG
[SRA]
Identical group No.136912 (1 seq.)
>SRA1024537
SRR035084.345664
454 Sequencing (SRP001805)
304
390
+
Leu
TAG
[SRA]
Identical group No.136918 (1 seq.)
>SRA1025209
SRR035084.516344
454 Sequencing (SRP001805)
147
233
+
Leu
TAG
[SRA]
Identical group No.136920 (1 seq.)
>SRA1025333
SRR035084.554545
454 Sequencing (SRP001805)
228
314
+
Leu
TAG
[SRA]
Identical group No.169146 (1 seq.)
>SRA1023993
SRR035084.224519
454 Sequencing (SRP001805)
186
271
+
Leu
TAG
[SRA]
Identical group No.202978 (1 seq.)
>SRA1023220
SRR035084.42089
454 Sequencing (SRP001805)
159
243
+
Leu
TAG
[SRA]
Identical group No.202980 (2 seq.)
>SRA1023446
SRR035084.100863
454 Sequencing (SRP001805)
288
372
+
Leu
TAG
[SRA]
>SRA1023694
SRR035084.153162
454 Sequencing (SRP001805)
289
373
+
Leu
TAG
[SRA]
Identical group No.202984 (1 seq.)
>SRA1024082
SRR035084.246191
454 Sequencing (SRP001805)
209
293
+
Leu
TAG
[SRA]
Identical group No.202985 (1 seq.)
>SRA1024571
SRR035084.351474
454 Sequencing (SRP001805)
483
399
-
Leu
TAG
[SRA]
Identical group No.202987 (1 seq.)
>SRA1024721
SRR035084.384971
454 Sequencing (SRP001805)
244
326
+
Leu
TAG
[SRA]
Identical group No.202990 (1 seq.)
>SRA1024934
SRR035084.438970
454 Sequencing (SRP001805)
13
97
+
Leu
TAG
[SRA]
Identical group No.202991 (1 seq.)
>SRA1025035
SRR035084.464495
454 Sequencing (SRP001805)
235
151
-
Leu
TAG
[SRA]
Identical group No.224207 (1 seq.)
>SRA1023208
SRR035084.38278
454 Sequencing (SRP001805)
123
206
+
Leu
TAG
[SRA]
Identical group No.224209 (1 seq.)
>SRA1023935
SRR035084.211270
454 Sequencing (SRP001805)
62
145
+
Leu
TAG
[SRA]
Identical group No.238078 (1 seq.)
>SRA1024458
SRR035084.330258
454 Sequencing (SRP001805)
447
372
-
Leu
TAG
[SRA]
Identical group No.573391 (1 seq.)
>SRA1023755
SRR035084.166020
454 Sequencing (SRP001805)
408
483
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK