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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TAT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238062 (1 seq.)
>SRA1024629
SRR035084.363912
454 Sequencing (SRP001805)
309
387
+
Ile
TAT
[SRA]
Identical group No.257981 (1 seq.)
>SRA1024358
SRR035084.306826
454 Sequencing (SRP001805)
333
259
-
Ile
TAT
[SRA]
Identical group No.257991 (1 seq.)
>SRA1024839
SRR035084.417020
454 Sequencing (SRP001805)
317
391
+
Ile
TAT
[SRA]
Identical group No.381084 (1 seq.)
>SRA1023342
SRR035084.74515
454 Sequencing (SRP001805)
109
36
-
Ile
TAT
[SRA]
Identical group No.381096 (1 seq.)
>SRA1023810
SRR035084.181276
454 Sequencing (SRP001805)
196
272
+
Ile
TAT
[SRA]
Identical group No.381122 (1 seq.)
>SRA1024498
SRR035084.338556
454 Sequencing (SRP001805)
324
399
+
Ile
TAT
[SRA]
Identical group No.573374 (1 seq.)
>SRA1023439
SRR035084.99012
454 Sequencing (SRP001805)
236
163
-
Ile
TAT
[SRA]
Identical group No.573385 (1 seq.)
>SRA1023638
SRR035084.140666
454 Sequencing (SRP001805)
428
356
-
Ile
TAT
[SRA]
Identical group No.573397 (1 seq.)
>SRA1024146
SRR035084.259578
454 Sequencing (SRP001805)
436
364
-
Ile
TAT
[SRA]
Identical group No.726880 (1 seq.)
>SRA1023433
SRR035084.98044
454 Sequencing (SRP001805)
101
175
+
Ile
TAT
[SRA]
Identical group No.726884 (2 seq.)
>SRA1023491
SRR035084.109652
454 Sequencing (SRP001805)
219
145
-
Ile
TAT
[SRA]
>SRA1023968
SRR035084.218764
454 Sequencing (SRP001805)
220
146
-
Ile
TAT
[SRA]
Identical group No.812818 (1 seq.)
>SRA1024270
SRR035084.289190
454 Sequencing (SRP001805)
379
305
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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