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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TCC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238061 (1 seq.)
>SRA1024186
SRR035084.268455
454 Sequencing (SRP001805)
27
105
+
Gly
TCC
[SRA]
Identical group No.726901 (1 seq.)
>SRA1024008
SRR035084.227491
454 Sequencing (SRP001805)
237
311
+
Gly
TCC
[SRA]
Identical group No.812646 (1 seq.)
>SRA1023191
SRR035084.32338
454 Sequencing (SRP001805)
104
175
+
Gly
TCC
[SRA]
Identical group No.812648 (1 seq.)
>SRA1023334
SRR035084.72763
454 Sequencing (SRP001805)
461
388
-
Gly
TCC
[SRA]
Identical group No.812663 (1 seq.)
>SRA1024674
SRR035084.373583
454 Sequencing (SRP001805)
100
27
-
Gly
TCC
[SRA]
Identical group No.812666 (1 seq.)
>SRA1024854
SRR035084.422347
454 Sequencing (SRP001805)
321
248
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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