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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TCG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257978 (1 seq.)
>SRA1023907
SRR035084.205497
454 Sequencing (SRP001805)
407
330
-
Arg
TCG
[SRA]
Identical group No.573359 (1 seq.)
>SRA1023155
SRR035084.22330
454 Sequencing (SRP001805)
121
196
+
Arg
TCG
[SRA]
Identical group No.573389 (1 seq.)
>SRA1023708
SRR035084.157283
454 Sequencing (SRP001805)
300
375
+
Arg
TCG
[SRA]
Identical group No.573429 (1 seq.)
>SRA1024901
SRR035084.432658
454 Sequencing (SRP001805)
221
147
-
Arg
TCG
[SRA]
Identical group No.726890 (1 seq.)
>SRA1023676
SRR035084.148947
454 Sequencing (SRP001805)
257
186
-
Arg
TCG
[SRA]
Identical group No.726903 (1 seq.)
>SRA1024120
SRR035084.255008
454 Sequencing (SRP001805)
464
390
-
Arg
TCG
[SRA]
Identical group No.726937 (1 seq.)
>SRA1025405
SRR035084.583169
454 Sequencing (SRP001805)
261
187
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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