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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TCT
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238063 (1 seq.)
>SRA1024908
SRR035084.434088
454 Sequencing (SRP001805)
141
63
-
Arg
TCT
[SRA]
Identical group No.257980 (1 seq.)
>SRA1024241
SRR035084.279409
454 Sequencing (SRP001805)
222
299
+
Arg
TCT
[SRA]
Identical group No.257992 (1 seq.)
>SRA1024993
SRR035084.454853
454 Sequencing (SRP001805)
171
96
-
Arg
TCT
[SRA]
Identical group No.257997 (1 seq.)
>SRA1025075
SRR035084.478117
454 Sequencing (SRP001805)
347
424
+
Arg
TCT
[SRA]
Identical group No.257999 (1 seq.)
>SRA1025387
SRR035084.576395
454 Sequencing (SRP001805)
351
274
-
Arg
TCT
[SRA]
Identical group No.381079 (1 seq.)
>SRA1023232
SRR035084.44794
454 Sequencing (SRP001805)
126
50
-
Arg
TCT
[SRA]
Identical group No.381087 (1 seq.)
>SRA1023481
SRR035084.107671
454 Sequencing (SRP001805)
4
80
+
Arg
TCT
[SRA]
Identical group No.381107 (1 seq.)
>SRA1024136
SRR035084.258051
454 Sequencing (SRP001805)
208
282
+
Arg
TCT
[SRA]
Identical group No.381109 (1 seq.)
>SRA1024187
SRR035084.269028
454 Sequencing (SRP001805)
252
328
+
Arg
TCT
[SRA]
Identical group No.381117 (1 seq.)
>SRA1024371
SRR035084.309011
454 Sequencing (SRP001805)
392
319
-
Arg
TCT
[SRA]
Identical group No.381118 (1 seq.)
>SRA1024376
SRR035084.310132
454 Sequencing (SRP001805)
423
496
+
Arg
TCT
[SRA]
Identical group No.381133 (1 seq.)
>SRA1024819
SRR035084.412240
454 Sequencing (SRP001805)
239
163
-
Arg
TCT
[SRA]
Identical group No.381138 (1 seq.)
>SRA1024956
SRR035084.447192
454 Sequencing (SRP001805)
211
137
-
Arg
TCT
[SRA]
Identical group No.381139 (1 seq.)
>SRA1024957
SRR035084.447463
454 Sequencing (SRP001805)
416
340
-
Arg
TCT
[SRA]
Identical group No.573356 (1 seq.)
>SRA1023135
SRR035084.15138
454 Sequencing (SRP001805)
326
251
-
Arg
TCT
[SRA]
Identical group No.573405 (1 seq.)
>SRA1024354
SRR035084.306406
454 Sequencing (SRP001805)
228
155
-
Arg
TCT
[SRA]
Identical group No.573412 (1 seq.)
>SRA1024624
SRR035084.361981
454 Sequencing (SRP001805)
370
298
-
Arg
TCT
[SRA]
Identical group No.573416 (1 seq.)
>SRA1024651
SRR035084.369430
454 Sequencing (SRP001805)
246
171
-
Arg
TCT
[SRA]
Identical group No.573718 (1 seq.)
>SRA1024919
SRR035084.434928
454 Sequencing (SRP001805)
256
329
+
Arg
TCT
[SRA]
Identical group No.726871 (1 seq.)
>SRA1023222
SRR035084.42161
454 Sequencing (SRP001805)
146
72
-
Arg
TCT
[SRA]
Identical group No.726873 (1 seq.)
>SRA1023264
SRR035084.55794
454 Sequencing (SRP001805)
391
465
+
Arg
TCT
[SRA]
Identical group No.726900 (1 seq.)
>SRA1024001
SRR035084.226321
454 Sequencing (SRP001805)
168
94
-
Arg
TCT
[SRA]
Identical group No.726904 (1 seq.)
>SRA1024137
SRR035084.258051
454 Sequencing (SRP001805)
315
389
+
Arg
TCT
[SRA]
Identical group No.726934 (1 seq.)
>SRA1025306
SRR035084.545950
454 Sequencing (SRP001805)
369
298
-
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK