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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TGC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257982 (1 seq.)
>SRA1024392
SRR035084.315228
454 Sequencing (SRP001805)
389
312
-
Ala
TGC
[SRA]
Identical group No.257987 (1 seq.)
>SRA1024707
SRR035084.380928
454 Sequencing (SRP001805)
337
262
-
Ala
TGC
[SRA]
Identical group No.257995 (1 seq.)
>SRA1025052
SRR035084.470054
454 Sequencing (SRP001805)
503
428
-
Ala
TGC
[SRA]
Identical group No.381095 (2 seq.)
>SRA1023749
SRR035084.164742
454 Sequencing (SRP001805)
127
203
+
Ala
TGC
[SRA]
>SRA1024696
SRR035084.378437
454 Sequencing (SRP001805)
260
184
-
Ala
TGC
[SRA]
Identical group No.381121 (1 seq.)
>SRA1024409
SRR035084.317886
454 Sequencing (SRP001805)
189
113
-
Ala
TGC
[SRA]
Identical group No.381149 (1 seq.)
>SRA1025194
SRR035084.512038
454 Sequencing (SRP001805)
106
30
-
Ala
TGC
[SRA]
Identical group No.381150 (1 seq.)
>SRA1025203
SRR035084.514168
454 Sequencing (SRP001805)
242
317
+
Ala
TGC
[SRA]
Identical group No.573366 (1 seq.)
>SRA1023292
SRR035084.65505
454 Sequencing (SRP001805)
209
281
+
Ala
TGC
[SRA]
Identical group No.573381 (1 seq.)
>SRA1023566
SRR035084.124303
454 Sequencing (SRP001805)
290
364
+
Ala
TGC
[SRA]
Identical group No.573409 (1 seq.)
>SRA1024509
SRR035084.340154
454 Sequencing (SRP001805)
142
67
-
Ala
TGC
[SRA]
Identical group No.573417 (1 seq.)
>SRA1024686
SRR035084.376368
454 Sequencing (SRP001805)
426
502
+
Ala
TGC
[SRA]
Identical group No.573428 (1 seq.)
>SRA1024856
SRR035084.422347
454 Sequencing (SRP001805)
74
1
-
Ala
TGC
[SRA]
Identical group No.573440 (1 seq.)
>SRA1025114
SRR035084.488212
454 Sequencing (SRP001805)
78
3
-
Ala
TGC
[SRA]
Identical group No.726895 (1 seq.)
>SRA1023754
SRR035084.166020
454 Sequencing (SRP001805)
240
314
+
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK