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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TGG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.224225 (1 seq.)
>SRA1023377
SRR035084.83125
454 Sequencing (SRP001805)
82
1
-
Pro
TGG
[SRA]
Identical group No.257975 (1 seq.)
>SRA1023537
SRR035084.118451
454 Sequencing (SRP001805)
246
323
+
Pro
TGG
[SRA]
Identical group No.381082 (1 seq.)
>SRA1023287
SRR035084.64258
454 Sequencing (SRP001805)
108
182
+
Pro
TGG
[SRA]
Identical group No.381116 (1 seq.)
>SRA1024352
SRR035084.306289
454 Sequencing (SRP001805)
323
247
-
Pro
TGG
[SRA]
Identical group No.381154 (1 seq.)
>SRA1025407
SRR035084.583307
454 Sequencing (SRP001805)
155
231
+
Pro
TGG
[SRA]
Identical group No.381384 (1 seq.)
>SRA1024092
SRR035084.249522
454 Sequencing (SRP001805)
92
168
+
Pro
TGG
[SRA]
Identical group No.573400 (1 seq.)
>SRA1024233
SRR035084.277843
454 Sequencing (SRP001805)
411
337
-
Pro
TGG
[SRA]
Identical group No.573403 (1 seq.)
>SRA1024327
SRR035084.299425
454 Sequencing (SRP001805)
146
220
+
Pro
TGG
[SRA]
Identical group No.573413 (1 seq.)
>SRA1024628
SRR035084.363444
454 Sequencing (SRP001805)
281
356
+
Pro
TGG
[SRA]
Identical group No.573447 (1 seq.)
>SRA1025270
SRR035084.534829
454 Sequencing (SRP001805)
161
238
+
Pro
TGG
[SRA]
Identical group No.573448 (1 seq.)
>SRA1025282
SRR035084.538890
454 Sequencing (SRP001805)
408
335
-
Pro
TGG
[SRA]
Identical group No.727189 (1 seq.)
>SRA1025076
SRR035084.478329
454 Sequencing (SRP001805)
222
148
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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