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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TGT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.234619 (1 seq.)
>SRA1024872
SRR035084.425658
454 Sequencing (SRP001805)
-1
76
+
Thr
TGT
[SRA]
Identical group No.381099 (1 seq.)
>SRA1023877
SRR035084.198043
454 Sequencing (SRP001805)
73
-1
-
Thr
TGT
[SRA]
Identical group No.381100 (1 seq.)
>SRA1023893
SRR035084.201689
454 Sequencing (SRP001805)
73
-1
-
Thr
TGT
[SRA]
Identical group No.573392 (1 seq.)
>SRA1023771
SRR035084.171976
454 Sequencing (SRP001805)
420
346
-
Thr
TGT
[SRA]
Identical group No.573395 (1 seq.)
>SRA1023965
SRR035084.218316
454 Sequencing (SRP001805)
129
54
-
Thr
TGT
[SRA]
Identical group No.573420 (1 seq.)
>SRA1024748
SRR035084.393187
454 Sequencing (SRP001805)
422
349
-
Thr
TGT
[SRA]
Identical group No.573438 (1 seq.)
>SRA1025095
SRR035084.483434
454 Sequencing (SRP001805)
11
86
+
Thr
TGT
[SRA]
Identical group No.573443 (1 seq.)
>SRA1025141
SRR035084.496166
454 Sequencing (SRP001805)
258
334
+
Thr
TGT
[SRA]
Identical group No.573444 (1 seq.)
>SRA1025151
SRR035084.499546
454 Sequencing (SRP001805)
301
373
+
Thr
TGT
[SRA]
Identical group No.727188 (1 seq.)
>SRA1024394
SRR035084.315644
454 Sequencing (SRP001805)
372
301
-
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK