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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TTG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.224211 (1 seq.)
>SRA1024265
SRR035084.286470
454 Sequencing (SRP001805)
247
166
-
Gln
TTG
[SRA]
Identical group No.381085 (1 seq.)
>SRA1023356
SRR035084.77535
454 Sequencing (SRP001805)
81
155
+
Gln
TTG
[SRA]
Identical group No.381089 (1 seq.)
>SRA1023562
SRR035084.123490
454 Sequencing (SRP001805)
373
297
-
Gln
TTG
[SRA]
Identical group No.381098 (1 seq.)
>SRA1023849
SRR035084.189918
454 Sequencing (SRP001805)
131
57
-
Gln
TTG
[SRA]
Identical group No.381130 (1 seq.)
>SRA1024745
SRR035084.393103
454 Sequencing (SRP001805)
365
290
-
Gln
TTG
[SRA]
Identical group No.573388 (1 seq.)
>SRA1023686
SRR035084.150077
454 Sequencing (SRP001805)
72
-1
-
Gln
TTG
[SRA]
Identical group No.726867 (1 seq.)
>SRA1023107
SRR035084.4468
454 Sequencing (SRP001805)
7
81
+
Gln
TTG
[SRA]
Identical group No.726868 (1 seq.)
>SRA1023136
SRR035084.15138
454 Sequencing (SRP001805)
247
173
-
Gln
TTG
[SRA]
Identical group No.726885 (1 seq.)
>SRA1023512
SRR035084.114230
454 Sequencing (SRP001805)
77
150
+
Gln
TTG
[SRA]
Identical group No.726908 (1 seq.)
>SRA1024282
SRR035084.291763
454 Sequencing (SRP001805)
204
277
+
Gln
TTG
[SRA]
Identical group No.812645 (1 seq.)
>SRA1023127
SRR035084.10923
454 Sequencing (SRP001805)
29
102
+
Gln
TTG
[SRA]
Identical group No.812651 (1 seq.)
>SRA1023637
SRR035084.140649
454 Sequencing (SRP001805)
368
442
+
Gln
TTG
[SRA]
Identical group No.812652 (1 seq.)
>SRA1023679
SRR035084.149318
454 Sequencing (SRP001805)
154
227
+
Gln
TTG
[SRA]
Identical group No.812670 (1 seq.)
>SRA1025019
SRR035084.460077
454 Sequencing (SRP001805)
298
227
-
Gln
TTG
[SRA]
Identical group No.812674 (1 seq.)
>SRA1025181
SRR035084.509837
454 Sequencing (SRP001805)
7
80
+
Gln
TTG
[SRA]
Identical group No.812816 (1 seq.)
>SRA1024051
SRR035084.237493
454 Sequencing (SRP001805)
163
236
+
Gln
TTG
[SRA]
Identical group No.812821 (1 seq.)
>SRA1025294
SRR035084.543800
454 Sequencing (SRP001805)
189
117
-
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK