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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = TTT
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25979 (1 seq.)
>SRA1024841
SRR035084.417630
454 Sequencing (SRP001805)
78
167
+
Lys
TTT
[SRA]
Identical group No.61385 (1 seq.)
>SRA1024295
SRR035084.292915
454 Sequencing (SRP001805)
403
314
-
Lys
TTT
[SRA]
Identical group No.224226 (1 seq.)
>SRA1024333
SRR035084.301231
454 Sequencing (SRP001805)
285
202
-
Lys
TTT
[SRA]
Identical group No.224227 (1 seq.)
>SRA1024581
SRR035084.354020
454 Sequencing (SRP001805)
368
285
-
Lys
TTT
[SRA]
Identical group No.257983 (1 seq.)
>SRA1024413
SRR035084.318666
454 Sequencing (SRP001805)
326
251
-
Lys
TTT
[SRA]
Identical group No.381090 (1 seq.)
>SRA1023565
SRR035084.124303
454 Sequencing (SRP001805)
213
287
+
Lys
TTT
[SRA]
Identical group No.381092 (1 seq.)
>SRA1023643
SRR035084.141747
454 Sequencing (SRP001805)
104
180
+
Lys
TTT
[SRA]
Identical group No.381105 (1 seq.)
>SRA1024087
SRR035084.248212
454 Sequencing (SRP001805)
284
359
+
Lys
TTT
[SRA]
Identical group No.573371 (1 seq.)
>SRA1023367
SRR035084.80190
454 Sequencing (SRP001805)
447
372
-
Lys
TTT
[SRA]
Identical group No.573406 (1 seq.)
>SRA1024375
SRR035084.310132
454 Sequencing (SRP001805)
301
373
+
Lys
TTT
[SRA]
Identical group No.573415 (1 seq.)
>SRA1024649
SRR035084.368935
454 Sequencing (SRP001805)
345
272
-
Lys
TTT
[SRA]
Identical group No.573421 (1 seq.)
>SRA1024774
SRR035084.398468
454 Sequencing (SRP001805)
308
381
+
Lys
TTT
[SRA]
Identical group No.726874 (1 seq.)
>SRA1023265
SRR035084.56035
454 Sequencing (SRP001805)
279
207
-
Lys
TTT
[SRA]
Identical group No.726883 (2 seq.)
>SRA1023490
SRR035084.109652
454 Sequencing (SRP001805)
378
304
-
Lys
TTT
[SRA]
>SRA1023967
SRR035084.218764
454 Sequencing (SRP001805)
379
305
-
Lys
TTT
[SRA]
Identical group No.726891 (1 seq.)
>SRA1023678
SRR035084.149318
454 Sequencing (SRP001805)
78
152
+
Lys
TTT
[SRA]
Identical group No.726892 (1 seq.)
>SRA1023685
SRR035084.149783
454 Sequencing (SRP001805)
368
442
+
Lys
TTT
[SRA]
Identical group No.727184 (1 seq.)
>SRA1023413
SRR035084.93061
454 Sequencing (SRP001805)
283
212
-
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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