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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = AAG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171765 (1 seq.)
>SRA1028531
SRR035086.350260
454 Sequencing (SRP001807)
312
230
-
Leu
AAG
[SRA]
Identical group No.184057 (120 seq.)
>WENV180100070
OANK01019294
[OANK] marine metagenome; ENVO:00002010
219
138
-
Leu
AAG
[ENA]
¢þ
>WENV180104746
OAPC01090618
[OAPC] marine metagenome; na
258
177
-
Leu
AAG
[ENA]
¢þ
>WENV180106604
OAPE01187353
[OAPE] marine metagenome; Sterivex cartridges
118
37
-
Leu
AAG
[ENA]
¢þ
>WENV180110098
OAPL01105839
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
3
84
+
Leu
AAG
[ENA]
¢þ
>WENV180214655
OBAP01028968
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
133
214
+
Leu
AAG
[ENA]
¢þ
>WENV180299398
OBJC01004597
[OBJC] metagenome; water
556
474
-
Leu
AAG
[ENA]
¢þ
>WENV180356552
OBNK01047097
[OBNK] sediment metagenome; sediment
93
174
+
Leu
AAG
[ENA]
¢þ
>WENV180364153
OBNZ01109341
[OBNZ] marine metagenome; ENVO:00002010
76
157
+
Leu
AAG
[ENA]
¢þ
>WENV180375142
OBOK01135616
[OBOK] marine metagenome; seawater
263
182
-
Leu
AAG
[ENA]
¢þ
>WENV180377782
OBON01119984
[OBON] marine metagenome; sea water
230
149
-
Leu
AAG
[ENA]
¢þ
>WENV180384759
OBOY01039069
[OBOY] marine metagenome; Sterile flask
207
126
-
Leu
AAG
[ENA]
¢þ
>WENV180397656
OBPY01056214
[OBPY] marine metagenome; Mesotrophic water
241
160
-
Leu
AAG
[ENA]
¢þ
>WENV180585529
OCOL01019294
[OCOL] marine metagenome; ENVO:00002010
219
138
-
Leu
AAG
[ENA]
¢þ
>WENV180639153
OCRI01161781
[OCRI] marine metagenome; Sterile flask
138
219
+
Leu
AAG
[ENA]
¢þ
>WENV180650609
OCSY01103883
[OCSY] marine metagenome; 30 L Plastic container
83
2
-
Leu
AAG
[ENA]
¢þ
>WENV180689884
OCZB010191323
[OCZB] metagenome; Oyster Gut Contents
95
14
-
Leu
AAG
[ENA]
¢þ
>WENV181092702
OEBK01032045
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
194
275
+
Leu
AAG
[ENA]
¢þ
>WENV181306664
OFIM01000391
[OFIM] marine metagenome; seawater
81
162
+
Leu
AAG
[ENA]
¢þ
>WENV181385706
OFRJ01009559
[OFRJ] marine metagenome; seawater
108
189
+
Leu
AAG
[ENA]
¢þ
>WENV181391795
OFRU01001687
[OFRU] freshwater metagenome; Freshwater Lake
441
522
+
Leu
AAG
[ENA]
¢þ
>WENV182540906
OJAQ01000284
[OJAQ] seawater metagenome; Sea water
1420
1339
-
Leu
AAG
[ENA]
¢þ
>WENV182541365
OJAT01003753
[OJAT] seawater metagenome; Sea water
300
381
+
Leu
AAG
[ENA]
¢þ
>WENV182544287
OJBF01002369
[OJBF] seawater metagenome; Sea water
195
276
+
Leu
AAG
[ENA]
¢þ
>WENV182545593
OJBN01008542
[OJBN] seawater metagenome; Sea water
788
869
+
Leu
AAG
[ENA]
¢þ
>WENV182550018
OJBZ01001752
[OJBZ] seawater metagenome; Sea water
150
231
+
Leu
AAG
[ENA]
¢þ
>WENV182552161
OJCJ01009725
[OJCJ] seawater metagenome; Sea water
1202
1121
-
Leu
AAG
[ENA]
¢þ
>WENV182552964
OJCQ01006959
[OJCQ] seawater metagenome; Sea water
354
435
+
Leu
AAG
[ENA]
¢þ
>WENV182554352
OJCU01002022
[OJCU] seawater metagenome; Sea water
1602
1521
-
Leu
AAG
[ENA]
¢þ
>WENV182556496
OJDG01012363
[OJDG] seawater metagenome; Sea water
1056
1137
+
Leu
AAG
[ENA]
¢þ
>WENV182557168
OJDI01001781
[OJDI] seawater metagenome; Sea water
789
870
+
Leu
AAG
[ENA]
¢þ
>WENV182558462
OJDM01004643
[OJDM] seawater metagenome; Sea water
786
705
-
Leu
AAG
[ENA]
¢þ
>WENV182561687
OJDX01000682
[OJDX] seawater metagenome; Sea water
2843
2924
+
Leu
AAG
[ENA]
¢þ
>WENV182561988
OJDY01000567
[OJDY] seawater metagenome; Sea water
4822
4741
-
Leu
AAG
[ENA]
¢þ
>WENV182564157
OJEE01000330
[OJEE] seawater metagenome; Sea water
7140
7221
+
Leu
AAG
[ENA]
¢þ
>WENV182566383
OJEL01000125
[OJEL] seawater metagenome; Sea water
208
289
+
Leu
AAG
[ENA]
¢þ
>WENV182569614
OJEZ01025122
[OJEZ] seawater metagenome; Sea water
133
214
+
Leu
AAG
[ENA]
¢þ
>WENV182569821
OJFB01000737
[OJFB] seawater metagenome; Sea water
6049
6130
+
Leu
AAG
[ENA]
¢þ
>WENV182570945
OJFF01017524
[OJFF] seawater metagenome; Sea water
469
550
+
Leu
AAG
[ENA]
¢þ
>WENV182573859
OJFQ01000554
[OJFQ] seawater metagenome; Sea water
788
869
+
Leu
AAG
[ENA]
¢þ
>WENV182576617
OJFY01000573
[OJFY] seawater metagenome; Sea water
151
232
+
Leu
AAG
[ENA]
¢þ
>WENV182582169
OJHA01000399
[OJHA] seawater metagenome; Sea water
3124
3043
-
Leu
AAG
[ENA]
¢þ
>WENV182583398
OJHD01008805
[OJHD] seawater metagenome; Sea water
349
268
-
Leu
AAG
[ENA]
¢þ
>WENV182589417
OJID01002609
[OJID] seawater metagenome; Sea water
831
912
+
Leu
AAG
[ENA]
¢þ
>WENV183053873
OLGR01000618
[OLGR] seawater metagenome; Sea water
3297
3216
-
Leu
AAG
[ENA]
¢þ
>WENV183054650
OLGU01000912
[OLGU] seawater metagenome; Sea water
4244
4325
+
Leu
AAG
[ENA]
¢þ
>WENV183059017
OLHS01001075
[OLHS] seawater metagenome; Sea water
2181
2100
-
Leu
AAG
[ENA]
¢þ
>WENV183059472
OLHU01007618
[OLHU] seawater metagenome; Sea water
151
232
+
Leu
AAG
[ENA]
¢þ
>WENV183059936
OLHW01000608
[OLHW] seawater metagenome; Sea water
3058
2977
-
Leu
AAG
[ENA]
¢þ
>WENV183060293
OLHX01001512
[OLHX] seawater metagenome; Sea water
151
232
+
Leu
AAG
[ENA]
¢þ
>WENV183629664
OOGQ01000707
[OOGQ] marine metagenome; seawater
653
734
+
Leu
AAG
[ENA]
¢þ
>WENV170306198
CESJ01012887
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
359
278
-
Leu
AAG
[ENA]
¢þ
>WENV170326684
CESU01014561
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
132
213
+
Leu
AAG
[ENA]
¢þ
>WENV170570056
FLMP01402885
[FLMP] seawater metagenome; seawater
163
246
+
Leu
AAG
[ENA]
¢þ
>WENV170599107
FUWD010063126
[FUWD] metagenome; unknown
103
22
-
Leu
AAG
[ENA]
¢þ
>WENV170599152
FUWD010065188
[FUWD] metagenome; unknown
148
229
+
Leu
AAG
[ENA]
¢þ
>WENV170599155
FUWD010065189
[FUWD] metagenome; unknown
71
152
+
Leu
AAG
[ENA]
¢þ
>WENV170601946
FUWD010202985
[FUWD] metagenome; unknown
503
584
+
Leu
AAG
[ENA]
¢þ
>WENV170602691
FUWD010254206
[FUWD] metagenome; unknown
482
566
+
Leu
AAG
[ENA]
¢þ
>WENV170616981
FUWD012911664
[FUWD] metagenome; unknown
810
891
+
Leu
AAG
[ENA]
¢þ
>WENV170616982
FUWD012911665
[FUWD] metagenome; unknown
349
430
+
Leu
AAG
[ENA]
¢þ
>WENV170616983
FUWD012911666
[FUWD] metagenome; unknown
301
382
+
Leu
AAG
[ENA]
¢þ
>WENV170616985
FUWD012911667
[FUWD] metagenome; unknown
265
346
+
Leu
AAG
[ENA]
¢þ
>WENV170616987
FUWD012911668
[FUWD] metagenome; unknown
176
257
+
Leu
AAG
[ENA]
¢þ
>WENV170617024
FUWD012911682
[FUWD] metagenome; unknown
485
566
+
Leu
AAG
[ENA]
¢þ
>WENV170618382
FUWD012965286
[FUWD] metagenome; unknown
200
281
+
Leu
AAG
[ENA]
¢þ
>WENV170619306
FUWD013008626
[FUWD] metagenome; unknown
3
84
+
Leu
AAG
[ENA]
¢þ
>WENV170622114
FUWD013087938
[FUWD] metagenome; unknown
268
184
-
Leu
AAG
[ENA]
¢þ
>WENV170630315
FUWD013302884
[FUWD] metagenome; unknown
268
184
-
Leu
AAG
[ENA]
¢þ
>SRA1026882
SRR035086.20328
454 Sequencing (SRP001807)
359
440
+
Leu
AAG
[SRA]
>SRA1026938
SRR035086.31134
454 Sequencing (SRP001807)
208
127
-
Leu
AAG
[SRA]
>SRA1027017
SRR035086.44794
454 Sequencing (SRP001807)
327
246
-
Leu
AAG
[SRA]
>SRA1027082
SRR035086.59082
454 Sequencing (SRP001807)
257
176
-
Leu
AAG
[SRA]
>SRA1027110
SRR035086.63783
454 Sequencing (SRP001807)
274
355
+
Leu
AAG
[SRA]
>SRA1027133
SRR035086.68882
454 Sequencing (SRP001807)
180
99
-
Leu
AAG
[SRA]
>SRA1027283
SRR035086.96104
454 Sequencing (SRP001807)
335
416
+
Leu
AAG
[SRA]
>SRA1027331
SRR035086.107690
454 Sequencing (SRP001807)
250
169
-
Leu
AAG
[SRA]
>SRA1027378
SRR035086.114814
454 Sequencing (SRP001807)
57
138
+
Leu
AAG
[SRA]
>SRA1027399
SRR035086.117340
454 Sequencing (SRP001807)
302
221
-
Leu
AAG
[SRA]
>SRA1027414
SRR035086.121019
454 Sequencing (SRP001807)
124
43
-
Leu
AAG
[SRA]
>SRA1027438
SRR035086.125515
454 Sequencing (SRP001807)
325
244
-
Leu
AAG
[SRA]
>SRA1027447
SRR035086.126311
454 Sequencing (SRP001807)
155
74
-
Leu
AAG
[SRA]
>SRA1027507
SRR035086.137563
454 Sequencing (SRP001807)
128
47
-
Leu
AAG
[SRA]
>SRA1027520
SRR035086.140052
454 Sequencing (SRP001807)
402
321
-
Leu
AAG
[SRA]
>SRA1027563
SRR035086.147818
454 Sequencing (SRP001807)
158
239
+
Leu
AAG
[SRA]
>SRA1027616
SRR035086.161342
454 Sequencing (SRP001807)
139
220
+
Leu
AAG
[SRA]
>SRA1027618
SRR035086.161504
454 Sequencing (SRP001807)
81
162
+
Leu
AAG
[SRA]
>SRA1027626
SRR035086.162906
454 Sequencing (SRP001807)
155
74
-
Leu
AAG
[SRA]
>SRA1027652
SRR035086.166633
454 Sequencing (SRP001807)
189
108
-
Leu
AAG
[SRA]
>SRA1027658
SRR035086.168114
454 Sequencing (SRP001807)
13
94
+
Leu
AAG
[SRA]
>SRA1027690
SRR035086.174756
454 Sequencing (SRP001807)
119
38
-
Leu
AAG
[SRA]
>SRA1027708
SRR035086.177262
454 Sequencing (SRP001807)
34
115
+
Leu
AAG
[SRA]
>SRA1027825
SRR035086.201302
454 Sequencing (SRP001807)
528
447
-
Leu
AAG
[SRA]
>SRA1027900
SRR035086.215407
454 Sequencing (SRP001807)
220
139
-
Leu
AAG
[SRA]
>SRA1028007
SRR035086.236171
454 Sequencing (SRP001807)
359
440
+
Leu
AAG
[SRA]
>SRA1028180
SRR035086.270991
454 Sequencing (SRP001807)
343
262
-
Leu
AAG
[SRA]
>SRA1028221
SRR035086.279412
454 Sequencing (SRP001807)
402
321
-
Leu
AAG
[SRA]
>SRA1028247
SRR035086.283653
454 Sequencing (SRP001807)
113
32
-
Leu
AAG
[SRA]
>SRA1028289
SRR035086.293203
454 Sequencing (SRP001807)
155
236
+
Leu
AAG
[SRA]
>SRA1028295
SRR035086.294125
454 Sequencing (SRP001807)
107
188
+
Leu
AAG
[SRA]
>SRA1028542
SRR035086.354124
454 Sequencing (SRP001807)
280
361
+
Leu
AAG
[SRA]
>SRA1028552
SRR035086.355650
454 Sequencing (SRP001807)
104
185
+
Leu
AAG
[SRA]
>SRA1028584
SRR035086.366307
454 Sequencing (SRP001807)
250
169
-
Leu
AAG
[SRA]
>SRA1028617
SRR035086.376618
454 Sequencing (SRP001807)
181
262
+
Leu
AAG
[SRA]
>SRA1028655
SRR035086.389324
454 Sequencing (SRP001807)
146
227
+
Leu
AAG
[SRA]
>SRA1028696
SRR035086.400607
454 Sequencing (SRP001807)
158
77
-
Leu
AAG
[SRA]
>SRA1050717
SRR035096.3663
454 Sequencing (SRP001817)
24
105
+
Leu
AAG
[SRA]
>SRA1050736
SRR035096.8399
454 Sequencing (SRP001817)
291
210
-
Leu
AAG
[SRA]
>SRA1050748
SRR035096.12919
454 Sequencing (SRP001817)
131
50
-
Leu
AAG
[SRA]
>SRA1050773
SRR035096.19261
454 Sequencing (SRP001817)
98
179
+
Leu
AAG
[SRA]
>SRA1050785
SRR035096.20471
454 Sequencing (SRP001817)
277
358
+
Leu
AAG
[SRA]
>SRA1050832
SRR035096.28768
454 Sequencing (SRP001817)
277
358
+
Leu
AAG
[SRA]
>SRA1050841
SRR035096.31121
454 Sequencing (SRP001817)
257
338
+
Leu
AAG
[SRA]
>SRA1050861
SRR035096.34882
454 Sequencing (SRP001817)
289
370
+
Leu
AAG
[SRA]
>SRA1051120
SRR035096.89917
454 Sequencing (SRP001817)
167
86
-
Leu
AAG
[SRA]
>SRA1051125
SRR035096.91314
454 Sequencing (SRP001817)
297
216
-
Leu
AAG
[SRA]
>SRA1051185
SRR035096.104137
454 Sequencing (SRP001817)
251
170
-
Leu
AAG
[SRA]
>SRA1051204
SRR035096.109503
454 Sequencing (SRP001817)
270
189
-
Leu
AAG
[SRA]
>SRA1051216
SRR035096.111702
454 Sequencing (SRP001817)
402
321
-
Leu
AAG
[SRA]
>SRA1051271
SRR035096.126989
454 Sequencing (SRP001817)
189
270
+
Leu
AAG
[SRA]
>SRA1051279
SRR035096.127633
454 Sequencing (SRP001817)
26
107
+
Leu
AAG
[SRA]
Identical group No.206661 (1 seq.)
>SRA1027151
SRR035086.72369
454 Sequencing (SRP001807)
9
90
+
Leu
AAG
[SRA]
Identical group No.206664 (2 seq.)
>SRA1027617
SRR035086.161391
454 Sequencing (SRP001807)
237
156
-
Leu
AAG
[SRA]
>SRA1027680
SRR035086.171178
454 Sequencing (SRP001807)
237
156
-
Leu
AAG
[SRA]
Identical group No.225336 (1 seq.)
>SRA1028001
SRR035086.234858
454 Sequencing (SRP001807)
339
259
-
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK