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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = ACG
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235657 (1 seq.)
>SRA1030848
SRR035087.338351
454 Sequencing (SRP001808)
171
93
-
Arg
ACG
[SRA]
Identical group No.244477 (1 seq.)
>SRA1030093
SRR035087.226757
454 Sequencing (SRP001808)
196
121
-
Arg
ACG
[SRA]
Identical group No.244481 (1 seq.)
>SRA1030178
SRR035087.238582
454 Sequencing (SRP001808)
370
446
+
Arg
ACG
[SRA]
Identical group No.300365 (1 seq.)
>SRA1029569
SRR035087.147443
454 Sequencing (SRP001808)
246
170
-
Arg
ACG
[SRA]
Identical group No.300448 (1 seq.)
>SRA1030058
SRR035087.222060
454 Sequencing (SRP001808)
145
72
-
Arg
ACG
[SRA]
Identical group No.300457 (1 seq.)
>SRA1030123
SRR035087.230432
454 Sequencing (SRP001808)
483
559
+
Arg
ACG
[SRA]
Identical group No.300478 (1 seq.)
>SRA1030254
SRR035087.250267
454 Sequencing (SRP001808)
243
319
+
Arg
ACG
[SRA]
Identical group No.300529 (1 seq.)
>SRA1030499
SRR035087.288051
454 Sequencing (SRP001808)
188
264
+
Arg
ACG
[SRA]
Identical group No.300541 (1 seq.)
>SRA1030574
SRR035087.298003
454 Sequencing (SRP001808)
202
127
-
Arg
ACG
[SRA]
Identical group No.300547 (1 seq.)
>SRA1030614
SRR035087.304621
454 Sequencing (SRP001808)
402
325
-
Arg
ACG
[SRA]
Identical group No.300586 (1 seq.)
>SRA1030907
SRR035087.344976
454 Sequencing (SRP001808)
38
114
+
Arg
ACG
[SRA]
Identical group No.300623 (1 seq.)
>SRA1031131
SRR035087.378260
454 Sequencing (SRP001808)
330
255
-
Arg
ACG
[SRA]
Identical group No.300629 (1 seq.)
>SRA1031153
SRR035087.381230
454 Sequencing (SRP001808)
316
392
+
Arg
ACG
[SRA]
Identical group No.300630 (1 seq.)
>SRA1031154
SRR035087.381450
454 Sequencing (SRP001808)
194
118
-
Arg
ACG
[SRA]
Identical group No.300714 (1 seq.)
>SRA1031639
SRR035087.463103
454 Sequencing (SRP001808)
166
242
+
Arg
ACG
[SRA]
Identical group No.300753 (1 seq.)
>SRA1031949
SRR035087.518306
454 Sequencing (SRP001808)
112
35
-
Arg
ACG
[SRA]
Identical group No.300766 (1 seq.)
>SRA1032062
SRR035087.542521
454 Sequencing (SRP001808)
316
240
-
Arg
ACG
[SRA]
Identical group No.300780 (1 seq.)
>SRA1032139
SRR035087.560450
454 Sequencing (SRP001808)
156
80
-
Arg
ACG
[SRA]
Identical group No.484137 (1 seq.)
>SRA1029399
SRR035087.121325
454 Sequencing (SRP001808)
138
63
-
Arg
ACG
[SRA]
Identical group No.484213 (1 seq.)
>SRA1029868
SRR035087.194703
454 Sequencing (SRP001808)
229
154
-
Arg
ACG
[SRA]
Identical group No.484371 (1 seq.)
>SRA1030880
SRR035087.342377
454 Sequencing (SRP001808)
291
366
+
Arg
ACG
[SRA]
Identical group No.484388 (1 seq.)
>SRA1030997
SRR035087.358368
454 Sequencing (SRP001808)
102
27
-
Arg
ACG
[SRA]
Identical group No.672252 (1 seq.)
>SRA1028893
SRR035087.32381
454 Sequencing (SRP001808)
231
305
+
Arg
ACG
[SRA]
Identical group No.672352 (1 seq.)
>SRA1029677
SRR035087.162293
454 Sequencing (SRP001808)
484
410
-
Arg
ACG
[SRA]
Identical group No.672387 (1 seq.)
>SRA1029999
SRR035087.214116
454 Sequencing (SRP001808)
103
31
-
Arg
ACG
[SRA]
Identical group No.672475 (1 seq.)
>SRA1030730
SRR035087.321659
454 Sequencing (SRP001808)
358
284
-
Arg
ACG
[SRA]
Identical group No.672561 (1 seq.)
>SRA1031425
SRR035087.427643
454 Sequencing (SRP001808)
294
220
-
Arg
ACG
[SRA]
Identical group No.672584 (1 seq.)
>SRA1031613
SRR035087.460117
454 Sequencing (SRP001808)
103
177
+
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK