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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CAA
HIT:
42 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49622 (1 seq.)
>SRA1032388
SRR035087.620057
454 Sequencing (SRP001808)
267
356
+
Leu
CAA
[SRA]
Identical group No.74719 (1 seq.)
>SRA1028922
SRR035087.37576
454 Sequencing (SRP001808)
135
221
+
Leu
CAA
[SRA]
Identical group No.74721 (1 seq.)
>SRA1029160
SRR035087.85271
454 Sequencing (SRP001808)
130
42
-
Leu
CAA
[SRA]
Identical group No.74725 (1 seq.)
>SRA1029284
SRR035087.103500
454 Sequencing (SRP001808)
186
272
+
Leu
CAA
[SRA]
Identical group No.74755 (1 seq.)
>SRA1032119
SRR035087.556442
454 Sequencing (SRP001808)
13
101
+
Leu
CAA
[SRA]
Identical group No.90528 (1 seq.)
>SRA1028795
SRR035087.8643
454 Sequencing (SRP001808)
32
116
+
Leu
CAA
[SRA]
Identical group No.90539 (1 seq.)
>SRA1029406
SRR035087.122336
454 Sequencing (SRP001808)
509
422
-
Leu
CAA
[SRA]
Identical group No.90557 (1 seq.)
>SRA1030038
SRR035087.220041
454 Sequencing (SRP001808)
236
149
-
Leu
CAA
[SRA]
Identical group No.90582 (1 seq.)
>SRA1031137
SRR035087.379177
454 Sequencing (SRP001808)
266
179
-
Leu
CAA
[SRA]
Identical group No.90588 (1 seq.)
>SRA1031535
SRR035087.445638
454 Sequencing (SRP001808)
210
297
+
Leu
CAA
[SRA]
Identical group No.90595 (1 seq.)
>SRA1031823
SRR035087.495054
454 Sequencing (SRP001808)
313
397
+
Leu
CAA
[SRA]
Identical group No.90597 (1 seq.)
>SRA1031902
SRR035087.509176
454 Sequencing (SRP001808)
363
279
-
Leu
CAA
[SRA]
Identical group No.90621 (1 seq.)
>SRA1029783
SRR035087.180318
454 Sequencing (SRP001808)
113
28
-
Leu
CAA
[SRA]
Identical group No.118289 (1 seq.)
>SRA1029006
SRR035087.57832
454 Sequencing (SRP001808)
274
188
-
Leu
CAA
[SRA]
Identical group No.118301 (1 seq.)
>SRA1029466
SRR035087.131850
454 Sequencing (SRP001808)
393
308
-
Leu
CAA
[SRA]
Identical group No.118320 (1 seq.)
>SRA1029988
SRR035087.212497
454 Sequencing (SRP001808)
342
257
-
Leu
CAA
[SRA]
Identical group No.118331 (1 seq.)
>SRA1030339
SRR035087.265359
454 Sequencing (SRP001808)
276
190
-
Leu
CAA
[SRA]
Identical group No.118338 (1 seq.)
>SRA1030827
SRR035087.335598
454 Sequencing (SRP001808)
474
388
-
Leu
CAA
[SRA]
Identical group No.118367 (1 seq.)
>SRA1031577
SRR035087.452474
454 Sequencing (SRP001808)
155
69
-
Leu
CAA
[SRA]
Identical group No.118373 (1 seq.)
>SRA1031773
SRR035087.485009
454 Sequencing (SRP001808)
358
272
-
Leu
CAA
[SRA]
Identical group No.118385 (1 seq.)
>SRA1032071
SRR035087.545479
454 Sequencing (SRP001808)
186
100
-
Leu
CAA
[SRA]
Identical group No.118389 (1 seq.)
>SRA1032187
SRR035087.571845
454 Sequencing (SRP001808)
411
326
-
Leu
CAA
[SRA]
Identical group No.118390 (1 seq.)
>SRA1032248
SRR035087.586758
454 Sequencing (SRP001808)
123
208
+
Leu
CAA
[SRA]
Identical group No.118392 (1 seq.)
>SRA1032362
SRR035087.612500
454 Sequencing (SRP001808)
174
88
-
Leu
CAA
[SRA]
Identical group No.118393 (1 seq.)
>SRA1032374
SRR035087.616352
454 Sequencing (SRP001808)
403
320
-
Leu
CAA
[SRA]
Identical group No.157489 (1 seq.)
>SRA1029508
SRR035087.139133
454 Sequencing (SRP001808)
385
303
-
Leu
CAA
[SRA]
Identical group No.157495 (1 seq.)
>SRA1030110
SRR035087.228609
454 Sequencing (SRP001808)
275
193
-
Leu
CAA
[SRA]
Identical group No.157504 (1 seq.)
>SRA1030548
SRR035087.294338
454 Sequencing (SRP001808)
479
396
-
Leu
CAA
[SRA]
Identical group No.157523 (1 seq.)
>SRA1031295
SRR035087.406894
454 Sequencing (SRP001808)
179
97
-
Leu
CAA
[SRA]
Identical group No.157539 (1 seq.)
>SRA1032216
SRR035087.579049
454 Sequencing (SRP001808)
102
17
-
Leu
CAA
[SRA]
Identical group No.186092 (1 seq.)
>SRA1030601
SRR035087.303390
454 Sequencing (SRP001808)
229
145
-
Leu
CAA
[SRA]
Identical group No.186105 (1 seq.)
>SRA1031186
SRR035087.388352
454 Sequencing (SRP001808)
183
101
-
Leu
CAA
[SRA]
Identical group No.219640 (1 seq.)
>SRA1031292
SRR035087.406739
454 Sequencing (SRP001808)
187
270
+
Leu
CAA
[SRA]
Identical group No.232647 (1 seq.)
>SRA1030700
SRR035087.316194
454 Sequencing (SRP001808)
160
241
+
Leu
CAA
[SRA]
Identical group No.235643 (1 seq.)
>SRA1029082
SRR035087.69823
454 Sequencing (SRP001808)
64
139
+
Leu
CAA
[SRA]
Identical group No.235665 (1 seq.)
>SRA1031862
SRR035087.499856
454 Sequencing (SRP001808)
208
286
+
Leu
CAA
[SRA]
Identical group No.235679 (1 seq.)
>SRA1031307
SRR035087.409823
454 Sequencing (SRP001808)
188
112
-
Leu
CAA
[SRA]
Identical group No.244531 (1 seq.)
>SRA1031644
SRR035087.463883
454 Sequencing (SRP001808)
244
320
+
Leu
CAA
[SRA]
Identical group No.300310 (1 seq.)
>SRA1029066
SRR035087.68967
454 Sequencing (SRP001808)
173
100
-
Leu
CAA
[SRA]
Identical group No.300411 (1 seq.)
>SRA1029843
SRR035087.190720
454 Sequencing (SRP001808)
427
351
-
Leu
CAA
[SRA]
Identical group No.300673 (1 seq.)
>SRA1031388
SRR035087.422677
454 Sequencing (SRP001808)
164
88
-
Leu
CAA
[SRA]
Identical group No.484152 (1 seq.)
>SRA1029468
SRR035087.132181
454 Sequencing (SRP001808)
58
131
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK