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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CAG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90590 (1 seq.)
>SRA1031611
SRR035087.459817
454 Sequencing (SRP001808)
395
480
+
Leu
CAG
[SRA]
Identical group No.90596 (1 seq.)
>SRA1031845
SRR035087.498438
454 Sequencing (SRP001808)
115
28
-
Leu
CAG
[SRA]
Identical group No.118295 (1 seq.)
>SRA1029278
SRR035087.101921
454 Sequencing (SRP001808)
81
167
+
Leu
CAG
[SRA]
Identical group No.118303 (1 seq.)
>SRA1029488
SRR035087.135115
454 Sequencing (SRP001808)
177
263
+
Leu
CAG
[SRA]
Identical group No.118308 (1 seq.)
>SRA1029737
SRR035087.172995
454 Sequencing (SRP001808)
140
54
-
Leu
CAG
[SRA]
Identical group No.118314 (2 seq.)
>SRA1029896
SRR035087.198439
454 Sequencing (SRP001808)
3
87
+
Leu
CAG
[SRA]
>SRA1031609
SRR035087.459702
454 Sequencing (SRP001808)
3
87
+
Leu
CAG
[SRA]
Identical group No.118322 (1 seq.)
>SRA1030008
SRR035087.215459
454 Sequencing (SRP001808)
260
343
+
Leu
CAG
[SRA]
Identical group No.118328 (1 seq.)
>SRA1030219
SRR035087.244349
454 Sequencing (SRP001808)
301
387
+
Leu
CAG
[SRA]
Identical group No.118333 (1 seq.)
>SRA1030615
SRR035087.304683
454 Sequencing (SRP001808)
211
297
+
Leu
CAG
[SRA]
Identical group No.118391 (1 seq.)
>SRA1032259
SRR035087.589648
454 Sequencing (SRP001808)
245
160
-
Leu
CAG
[SRA]
Identical group No.157475 (1 seq.)
>SRA1028775
SRR035087.1048
454 Sequencing (SRP001808)
298
213
-
Leu
CAG
[SRA]
Identical group No.157488 (1 seq.)
>SRA1029291
SRR035087.104059
454 Sequencing (SRP001808)
310
225
-
Leu
CAG
[SRA]
Identical group No.157513 (1 seq.)
>SRA1030855
SRR035087.340195
454 Sequencing (SRP001808)
23
108
+
Leu
CAG
[SRA]
Identical group No.300288 (1 seq.)
>SRA1028901
SRR035087.34461
454 Sequencing (SRP001808)
317
241
-
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK