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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CCC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484495 (1 seq.)
>SRA1031807
SRR035087.492248
454 Sequencing (SRP001808)
249
324
+
Gly
CCC
[SRA]
Identical group No.484509 (1 seq.)
>SRA1031919
SRR035087.512242
454 Sequencing (SRP001808)
220
295
+
Gly
CCC
[SRA]
Identical group No.672246 (1 seq.)
>SRA1028855
SRR035087.24073
454 Sequencing (SRP001808)
274
348
+
Gly
CCC
[SRA]
Identical group No.672287 (2 seq.)
>SRA1029144
SRR035087.81307
454 Sequencing (SRP001808)
401
330
-
Gly
CCC
[SRA]
>SRA1029157
SRR035087.84385
454 Sequencing (SRP001808)
401
330
-
Gly
CCC
[SRA]
Identical group No.672363 (1 seq.)
>SRA1029761
SRR035087.177566
454 Sequencing (SRP001808)
362
291
-
Gly
CCC
[SRA]
Identical group No.672402 (1 seq.)
>SRA1030092
SRR035087.226706
454 Sequencing (SRP001808)
169
240
+
Gly
CCC
[SRA]
Identical group No.672448 (1 seq.)
>SRA1030451
SRR035087.280844
454 Sequencing (SRP001808)
491
417
-
Gly
CCC
[SRA]
Identical group No.672575 (1 seq.)
>SRA1031554
SRR035087.449087
454 Sequencing (SRP001808)
256
330
+
Gly
CCC
[SRA]
Identical group No.788039 (1 seq.)
>SRA1029322
SRR035087.108642
454 Sequencing (SRP001808)
286
356
+
Gly
CCC
[SRA]
Identical group No.788042 (1 seq.)
>SRA1029338
SRR035087.111300
454 Sequencing (SRP001808)
83
155
+
Gly
CCC
[SRA]
Identical group No.788053 (1 seq.)
>SRA1029515
SRR035087.139931
454 Sequencing (SRP001808)
134
61
-
Gly
CCC
[SRA]
Identical group No.788066 (1 seq.)
>SRA1029680
SRR035087.162602
454 Sequencing (SRP001808)
23
96
+
Gly
CCC
[SRA]
Identical group No.788218 (1 seq.)
>SRA1032082
SRR035087.549044
454 Sequencing (SRP001808)
373
302
-
Gly
CCC
[SRA]
Identical group No.788222 (1 seq.)
>SRA1032134
SRR035087.559622
454 Sequencing (SRP001808)
317
390
+
Gly
CCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK